Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00588 ATGCAAACATCTCAAGAACATGAACTTCCCTATGGCTCTGGCAGGTTCTACATCGAGCCTGCCCAAAACCCGGAGTCATATTGCTTTCCATCAAGTGAGAACCTAGAAAACTACTCTTCCTCTGATAACAGCAACCATGCAACCTACCCATTGGTCAAGATTTCGGATCCATATTGCACCCTTGAATCTGCTTCAACAAGTAATATCCCATGCCAAAATTCTGCATCTACAGCCAATTTTTCGCCTAATGGTAGCCCGGTGTCAAAGCTAGAACCGAAATCACATGTCTTGAGGCCACAACATTCTCTCGAAACTACTAATGGCTCACCGGAGATAAATTCTTGCTTGACACATGACCTTGATGATCTGAGGGATAAGATAAGAGAGCTCGAAACTGCTATGCTGGGGCCTGATACAAATACACTAAATATGTATGATATTGTGGTTCCGGAACCAGAAGAACCTGATTCCTTTTTGGTGGCTGCAGAGAAGTGGAAGAAAACAATGGAGATCATATCCAGAGGTGATTTAAAGGAGATGCTTTATACTTGTGCAAAATCAATGGCGGAGAACGATATGGAGACTACTGATTGGCTGATATCAGAGTTGCGTAAAATGGTTTCGATTTCAGGTGATCCTCTGCAACGATTGGGAGCATACATGTTGGAGTCTCTTGTTGCAAGGATGGCTTGCACAGGAAGCAAAATCTACAAGGCCTTAAAATGCAGTGAGCCCACCGGCAACGAACTCCTCTCATACATGCATGTACTTTATGAAATATGTCCATACTTCAAGTTTGGGTATATGTCGGCGAATGGAGCAATTGCCGAAGCTATGAAGGAGGAAAGTCATGTTCACATAATTGATTTTCAGATTAGCCAGGGAACTCAAGTTCCTGCTTCTGAGGTGCAACTAGAAGATCTTGAACTTCGAACTAATGAAGCTGTGGCAGTGAATTTTGCCATTATGCTGCACCATGTTCCGGATGAAAGTGTTACCAGTCTAAATCCTCGCGACCGGTTGTTGAGATTGGCAAAGAACTTGTCTCCCAAGGTAGTGACTCTAGTTGAGCAAGAGTTTAGTACTAATAATGCTCAATTCTTGCCGCGTTTCATGGTGACATTAAACTACTACTTGGCTGTTTTCGAATCGATTGATGCCGTCCTGCCAAGGGAGCACAAGGAGAGGATCAATGTTGAGCAGCACTGCTTGGCTAGAGAAGTTGTCAACTTAGTAGCCTGCGAAGGGGAAGAAAGAGTGGAACGGCACGAGCTTCTGAATAAGTGGAGAAGGCGTTTCACCGCTGCTGGATTTGCGCCTTATCCGCTGAGCTCCTTTGTTAATGCTTCAATCAAGACCCTTTTAGAAAGCTACCCTGGACATTACACTCTAGAAGAGAGAGATGGCACACTTTATCTTGGTTGGATGAATCAGGTTCTTATTGTCTCTTGTGCTTGGAGATGA 1464 0.4406 MQTSQEHELPYGSGRFYIEPAQNPESYCFPSSENLENYSSSDNSNHATYPLVKISDPYCTLESASTSNIPCQNSASTANFSPNGSPVSKLEPKSHVLRPQHSLETTNGSPEINSCLTHDLDDLRDKIRELETAMLGPDTNTLNMYDIVVPEPEEPDSFLVAAEKWKKTMEIISRGDLKEMLYTCAKSMAENDMETTDWLISELRKMVSISGDPLQRLGAYMLESLVARMACTGSKIYKALKCSEPTGNELLSYMHVLYEICPYFKFGYMSANGAIAEAMKEESHVHIIDFQISQGTQVPASEVQLEDLELRTNEAVAVNFAIMLHHVPDESVTSLNPRDRLLRLAKNLSPKVVTLVEQEFSTNNAQFLPRFMVTLNYYLAVFESIDAVLPREHKERINVEQHCLAREVVNLVACEGEERVERHELLNKWRRRFTAAGFAPYPLSSFVNASIKTLLESYPGHYTLEERDGTLYLGWMNQVLIVSCAWR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00588 487 ProSiteProfiles GRAS family profile. 168 487 IPR005202 -
Aip01g00588 487 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 297 IPR005202 -
Aip01g00588 487 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 17 297 - -
Aip01g00588 487 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 298 486 - -
Aip01g00588 487 Pfam GRAS domain family 177 300 IPR005202 -
Aip01g00588 487 Pfam GRAS domain family 301 487 IPR005202 -
Aip01g00588 487 Coils Coil 113 133 - -
Aip01g00588 487 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 298 486 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00588 Aip-Chr1 8797692 8799231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00588 169 487 GRAS Transcription Factor Family AT2G04890 55.108 5.54e-148 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip01g00588 GRAS 3.1e-65 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00588 - - aip:107620196 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00588 01 8797692 8799231 Aip01g00588 01 8797692 8799231 ECH