Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00578 ATGGATGAAAGTGAAAGTGGTGACATTGATTGGGAAAATGAACTGAGAAAATTTCAGAATGCAATAGCCACAGAGATCAAGTCCAAGAGAATCAAAGCCATGGCAATGCTTGCTCGTTACTCCAAACACGCCCCTGAACATGTATTGGCTCGCACCATACCCTTTCTTATGGAGATCCTTGGCCACAATAACCGTTCAAATGATTCTGCCAATTTCTCTCTTCAAATGGCTTCAGCTTATTGCTTGAAGTGCATAGCTTGCAGGAGTGACGAGTTGGTAACTCAAATGGGTGCAAACGGTGCTGCGCAATTGCTTATGAATTTGTTGCCTCATTCTGATGGGATGTTTCTGAAAGTTCTTGTGAAATGCTTGTTGGTTGTGGTTGGTTTTTGTAACACAAGTAGGGCTGTTGTTGCTACTGCTGGTGGGTTAGGTATCATTGTAAATAAGTTGAGTTCTTGCGAGGATCGGGAAATTCGAAGGTATTTGTTGGAGATTCTGAGTTTGTTGGCGCTGCGGCGCAATGTTAGGAGGGAAATAGTTAGGCTTGATGCTCTTCGCTATGTTGTGGAGGCTGTTGGTGTTGGTAGTATGGTCTCTAGAGAGAGGGCATGCCAAGCAATTGGGATGTTTGGAGTTACAAGAGAAGGTAGGCGGGCTGTTGTTGAATTGGGTGCAATACTCCCAGTTGTGGAGCTATTTTGCAGCAGAGATCACACCACGAAGCTTGTGGCTGGGAATACTCTTGGTGTGATCTCTGCCTATGTTGATTGCATTAGGTCAATTGCTCAAGCTGGGGCTATCCCCCTTTATTCCGAGCTTCTTGAAGGGGGCGATCCTTCTGGTAAGGACATCGCAGAGGACGCATTTTGCGTGTTGGCTTTTGATGAGGCTAACGCCATCGAAATTGTTGGGCACTTAGTAAGGATTATGAGAGATGGTGATAATGAGGCGAAGTCTGCAGCTGCTAATGTGGTGTGGGATCTATCAACTTACAACCACTCAATACCAGTGGTGCGCGATTCAGGCGTGATTCCGGTACTTGTTGAGCTTTTGGGGAGTGGAAGCAATGACGTAAAGGAGAATGTTTCTGGTGCATTTTCTCAGATGAGCTATGATAGGGTGAATAGAATTGCACTTTCCGATGCTGGGGTGGTTCCAATCTTCATTGACTTGTTGCATGACGATTTTGAGGAACTAAGGGATAATGCAGCTGAGGCTCTTGTCAATTTTTATGAAGATCCATTGTACCATGATAGTGTATCTCATATAATTGATGCTCCTTCATTCAGAAGCATGCAGAATCGGCTGGCTCAACTTCGTGAAACGAATGAGCGTGCTCCTGTAGAAAGAATGAATATTGATCTTCCCGCTTGGAATTCAGATCAAATAACCTAA 1398 0.4464 MDESESGDIDWENELRKFQNAIATEIKSKRIKAMAMLARYSKHAPEHVLARTIPFLMEILGHNNRSNDSANFSLQMASAYCLKCIACRSDELVTQMGANGAAQLLMNLLPHSDGMFLKVLVKCLLVVVGFCNTSRAVVATAGGLGIIVNKLSSCEDREIRRYLLEILSLLALRRNVRREIVRLDALRYVVEAVGVGSMVSRERACQAIGMFGVTREGRRAVVELGAILPVVELFCSRDHTTKLVAGNTLGVISAYVDCIRSIAQAGAIPLYSELLEGGDPSGKDIAEDAFCVLAFDEANAIEIVGHLVRIMRDGDNEAKSAAANVVWDLSTYNHSIPVVRDSGVIPVLVELLGSGSNDVKENVSGAFSQMSYDRVNRIALSDAGVVPIFIDLLHDDFEELRDNAAEALVNFYEDPLYHDSVSHIIDAPSFRSMQNRLAQLRETNERAPVERMNIDLPAWNSDQIT 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00578 465 Gene3D - 14 334 IPR011989 -
Aip01g00578 465 PANTHER U BOX DOMAIN-CONTAINING 5 446 - -
Aip01g00578 465 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 10-LIKE 5 446 - -
Aip01g00578 465 SUPERFAMILY ARM repeat 52 414 IPR016024 -
Aip01g00578 465 Pfam Armadillo/beta-catenin-like repeat 334 371 IPR000225 GO:0005515
Aip01g00578 465 Pfam Armadillo/beta-catenin-like repeat 375 410 IPR000225 GO:0005515
Aip01g00578 465 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 343 385 IPR000225 GO:0005515
Aip01g00578 465 SMART arm_5 255 295 IPR000225 GO:0005515
Aip01g00578 465 SMART arm_5 131 172 IPR000225 GO:0005515
Aip01g00578 465 SMART arm_5 296 331 IPR000225 GO:0005515
Aip01g00578 465 SMART arm_5 332 372 IPR000225 GO:0005515
Aip01g00578 465 SMART arm_5 214 254 IPR000225 GO:0005515
Aip01g00578 465 SMART arm_5 373 413 IPR000225 GO:0005515
Aip01g00578 465 Gene3D - 335 429 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00578 Aip-Chr1 8686179 8688300 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00578 262 415 U-box Gene Family AT2G23140 28.931 4.99e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00578 - - gmx:100819735 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00578 01 8686179 8688300 Aip01g00578 01 8686179 8688300 ECH