Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00534 ATGGGAACCTGCATGGAGAATTTTAATGAGGAGGAACACATTTTTCGCAGTAAATTCAAGCCGGTCCAAGTTCCGGACGACGTGACGCTGCCGGAATTCGTGCTCGAAAACGCCGAATTATACGCCAACAAGGTTGCATTTGTGGATGGTGTGAGTGAGAAAGCTATGACTTATAGTGAGGTGGTGAGAGACACAAAGAGATTGTCAAAGGCATTAAGGTCTCTTGGTTTGAGGAAGGGGAATGTGGTGATTGTGGTGCTTCCAAATGTGGTAGAATATGGAGTCATTGCTTTGGGAATAATGGCTGCTGGTGGTGTGTTCTCAGGAGCAAATCCAGCATCACATGTTTCAGAGATTAAGAAGCAAGTAGATTCCGCTGATGCCAAATTAATTGTCACAGATTCTACAATCTATGATAAGGTGAAAGCTCTAGAGTTGCCTGTAATTGTGCTAGCTGATGAGCCTATTGAGGAAGCTATGAACTACAAAAAACTACTTGAAGCCGCGGACCGCGCCGGCGACGATTCGGCTAAAGAACCAATTCATCAGAATGATCTGTGTGCCATGCCATTTTCATCAGGCACCACAGGGCTCTCAAAGGGTGTGATGCTTACACACAGAAACGTAGTAGCAAATCTTTGCTCAACACTCTTCGGTGTGGGACAAGAAATGATTGGCAATGTGACAACACTAGGACTAATCCCATTCTTTCACATCTATGGCATAACTGGAATATGTTGTGCCACTCTTAGGAACAAAGGGAAAGTTGTGGTTATGGGAAGGTATGATTTGAAGACATTTATTACTGCATTGATCAAACATGAGGTCAATTTTGCACCAATTGTGCCCCCAATTATTCTTGGATTGGTGAAGAATCCAATAGTGGATGAATTTGATCTTGGCAAGCTTAAACTCCAGGCTATTATGACTGCAGCTGCTCCACTTGCACCAGAAGTCCTTAATGCATTTAAACAAAAGTTTCCTGGTGTTGTTGTCCAAGAGGCATATGGACTAACTGAGCATAGCTGCATCACACTTACCCATGCAATCAAAGACGCTGGGGTTCTACACAAAAATTCAGTGGGGTTCATCCTCCCAAATTTGGAAGTTAAATTTATTGATCCTGATACTGGTCGATCCCTCCCAAGGAACACACCTGGGGAAATTTGTGTCCGAAGCCAATGTGTAATGCAAGGTTACTATAAACAGGTTGATGAAACTGCTCATACAATTGACAAGGATGGATGGCTTCACACCGGGGATGTAGGATACATAGATGATGAAGAGAATATATTTATTGTTGATCGCATCAAGGAGTTAATTAAATACAAAGGATTCCAAGTAGCTCCTGCTGAGTTAGAGGCCATTTTGTTATCTCATCCGTCGGTTGAAGATGCTGCAGTTGTGCCGTTGCCAGATGAAGAAGCAGGGGAAATCCCAGCTGCGAGTGTTGTCGTGAGCCGCGGCGCAAGAGTGACCGAAAAGGAAATCATGGACTATGTTGCTTCAAATGCTGCACATTACAAGAAAGTGAGGGTGGTGCACTTTGTAGAAACCATACCAAAATCACCTTCTGGGAAGATAATGAGAAGGCTTATTAAAGAGAGGATGGTGAAAAAAATGAAGACAAACTCCACACCAAAATCCAATATTTCTTAA 1659 0.431 MGTCMENFNEEEHIFRSKFKPVQVPDDVTLPEFVLENAELYANKVAFVDGVSEKAMTYSEVVRDTKRLSKALRSLGLRKGNVVIVVLPNVVEYGVIALGIMAAGGVFSGANPASHVSEIKKQVDSADAKLIVTDSTIYDKVKALELPVIVLADEPIEEAMNYKKLLEAADRAGDDSAKEPIHQNDLCAMPFSSGTTGLSKGVMLTHRNVVANLCSTLFGVGQEMIGNVTTLGLIPFFHIYGITGICCATLRNKGKVVVMGRYDLKTFITALIKHEVNFAPIVPPIILGLVKNPIVDEFDLGKLKLQAIMTAAAPLAPEVLNAFKQKFPGVVVQEAYGLTEHSCITLTHAIKDAGVLHKNSVGFILPNLEVKFIDPDTGRSLPRNTPGEICVRSQCVMQGYYKQVDETAHTIDKDGWLHTGDVGYIDDEENIFIVDRIKELIKYKGFQVAPAELEAILLSHPSVEDAAVVPLPDEEAGEIPAASVVVSRGARVTEKEIMDYVASNAAHYKKVRVVHFVETIPKSPSGKIMRRLIKERMVKKMKTNSTPKSNIS 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00534 552 ProSitePatterns Putative AMP-binding domain signature. 189 200 IPR020845 -
Aip01g00534 552 SUPERFAMILY Acetyl-CoA synthetase-like 13 539 - -
Aip01g00534 552 Gene3D - 439 543 IPR045851 -
Aip01g00534 552 CDD 4CL 24 531 - -
Aip01g00534 552 Pfam AMP-binding enzyme 36 443 IPR000873 -
Aip01g00534 552 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 540 - -
Aip01g00534 552 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
Aip01g00534 552 Gene3D - 12 438 IPR042099 -
Aip01g00534 552 PANTHER 4-COUMARATE--COA LIGASE-LIKE 1 7 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00534 Aip-Chr1 7831929 7837081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00534 5 538 Monolignol Biosynthesis Gene Families AT1G62940 71.747 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00534 K01904 - gmx:100811418 890.952