Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00514 ATGAGTTCTGTTTCTTCAACAATACTCCCTTATGAAACACAACAAAATAGGCCTTCTTTGATGACTAGAACGGCCATGAGAATATCGAGATCGAGATGGTTCACATTCTTGAGGAGAGTATTCCACTACCAAAACGGGCCGAGTTCTTCTTCGTCAGAACTCGGCTCGAACCCTTTCAATTCCAGCACCTGGATGGGGCTGGAATTGGTTGCATTGGTGGTTCAAATAACTAGCACGACTCTCACTCTTGCGATTTCCAAGAGTGAGAGACCAATTTGGCCTATGAGGATTTGGGTAGCTGGTTATGACATTGCTTGTGTTCTTAATTTGTTGCTTCTTTGTGGCCGCTACCATCAAATTCATGTCACCACTCATAGAGATGTTCTTAGCGATTTGGAGCAGCAGAGATACAATAATGGAGATGCAAGTTTACAGAAAAGGGCACATTTGATGAACAAATGCCGGAGTTCATTAGAGCTTTTCTTTGCAATGTGGTTTGTGATGGGAAATGTTTGGGCCTTTGACTCACGTTTTGGGTCATTCCAAGAAGCCCCAAAACTCAATATTCTATGCATAATTTTGCTCTCTTGGAATGCAATATGCTACTCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCTTGTTGTTCTTGTTGCTTTGTTGCATTGTCCCTTTAATTAGTACCTTCCTTGGTTACAACATGAACATGGGATCTAATGCTAAGGGTGCTTCTGAGGATCAAATCTCACAAATTCCAAGTTGGAGATATAAACAAGTTCATGATCATCATGCTTTAGATCATTGCAATCATAAGGATTGTTCTCAAACATTCATCAATGAGGATCAAGAGTGTTGTATTTGCTTGAACAAGTACAAAGACAAAGAAGAAGTTAGGCAATTGCCCTGTTTCCATCTCTTCCATAAAAAATGTGTGGATCAATGGCTAAGAATTATATCATGCTGCCCTCTTTGTAAACAAGGATTACAAAGGTAG 1020 0.3804 MSSVSSTILPYETQQNRPSLMTRTAMRISRSRWFTFLRRVFHYQNGPSSSSSELGSNPFNSSTWMGLELVALVVQITSTTLTLAISKSERPIWPMRIWVAGYDIACVLNLLLLCGRYHQIHVTTHRDVLSDLEQQRYNNGDASLQKRAHLMNKCRSSLELFFAMWFVMGNVWAFDSRFGSFQEAPKLNILCIILLSWNAICYSXXXXXXXXXXXXXXXXXXFLLFLLLCCIVPLISTFLGYNMNMGSNAKGASEDQISQIPSWRYKQVHDHHALDHCNHKDCSQTFINEDQECCICLNKYKDKEEVRQLPCFHLFHKKCVDQWLRIISCCPLCKQGLQR 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00514 339 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Aip01g00514 339 Pfam Ring finger domain 292 334 IPR001841 -
Aip01g00514 339 SUPERFAMILY RING/U-box 276 337 - -
Aip01g00514 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 338 IPR013083 -
Aip01g00514 339 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 13 338 - -
Aip01g00514 339 SMART ring_2 293 333 IPR001841 -
Aip01g00514 339 CDD RING-H2_RNF111_like 292 334 - -
Aip01g00514 339 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00514 Aip-Chr1 7259247 7261910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00514 23 337 C3H Transcription Factor Family AT4G26580 57.729 4.75e-125 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00514 - - ahf:112791228 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00514 01 7259247 7261910 Aip01g00514 01 7259247 7261910 ECH