Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00485 ATGAATTCTTCGAATGGAAGACCAACAAACAAGTTTGAGGATCAAGTTCCTTTTAGCCCTGAAATAGCTTATCACCAGCCAGAATCTACTATGGCTGCACGTGGATCACATCCCGGAGAATCGCTCACTGTTCGCAGCGAAACATTGGGGGGCATTATTTACAGGAGCATACGGCTTGTGGTTTTCTCGAACAGACTCAACTTGCTTATGCCTTTTGGGCCTCTTGCGATTCTTGTTCAGAAATTGACTGGTCATCATGGCTGGGTCTTCGGTCTTAGTTTACTGGGGATAATGCCTTTGGCAGAGCGGCTCGGTTATGCCACAGAGCAACTTGCATTTTACACTGGAGATACAGTTGGGGGTCTTTTAAATGCTACATTTGGAAATGCAACAGAATTAATAATCTCGTTATATGCTCTGAAAAGTGGATTGACACGAGTAGTCCAGCTCTCGCTGCTGGGTTCAATTTTGTCAAACATGTTGCTTGTGCTTGGATGTGCATTCTTAAGTGGTGGTATTGTTTTCAGCAAGAAGGAACAAGTATTTAACAAGGCAGCTGCTACGGTGAATTCAGGATTGCTGCTTATGGCAGTTATGGGCCTACTTTTTCCAGCTGTTCTTCATTATACACGAACTGAGGTGCATTTTGGGAAGTCAGAACTGGCGCTTTCAAGATTCAGCAGCTGTGTCATGCTTGTGGCCTATGCTGCATACTTATTTTTCCAGTTGAGAAGTCAAAGTGGTCTCTATATCTCTGCGAACGAGGAAGAGAGAGAGACAGGCGACAACTCAACTGACGATGAATCTCCTGAAATTTCTAAATGGGAATCAATAATCTGGCTTTCGGTTATGACTGCTTGGATATCAATTCTTTCCGAATATTTGGTTGGCGCTATAGAGGGAGCATCTAATTCATGGAACATACCTGTAACATTCATTAGTGTCATATTGCTTCCACTGGTGGGGAATGCAGCAGAACATGCTAGTGCTATCATGTTTGCCATGAAAGATAAATTAGACATCTCCTTGGGAGTAGCGATAGGGTCGTCCACACAGATATCTATGTTCGTTATACCATTTTGTGTTGTTATGGGGTGGATAATGGGGCAACCATTGGACCTGAACTTTCAACTTTTTGAGACAGCAGCACTATTTCTAACTGTTATAGTTGTTGCCTTCATGTTACAGGAAGGAACTGCAAATTACTTCAAGGGGGTAATGCTTGTGCTTTGCTATCTGATAGTAGCAGCTAGTTTTTATGTACATGTAGATTCCAATTCTGAAGACCAGCCTGTTCCCTAA 1302 0.4278 MNSSNGRPTNKFEDQVPFSPEIAYHQPESTMAARGSHPGESLTVRSETLGGIIYRSIRLVVFSNRLNLLMPFGPLAILVQKLTGHHGWVFGLSLLGIMPLAERLGYATEQLAFYTGDTVGGLLNATFGNATELIISLYALKSGLTRVVQLSLLGSILSNMLLVLGCAFLSGGIVFSKKEQVFNKAAATVNSGLLLMAVMGLLFPAVLHYTRTEVHFGKSELALSRFSSCVMLVAYAAYLFFQLRSQSGLYISANEEERETGDNSTDDESPEISKWESIIWLSVMTAWISILSEYLVGAIEGASNSWNIPVTFISVILLPLVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFVIPFCVVMGWIMGQPLDLNFQLFETAALFLTVIVVAFMLQEGTANYFKGVMLVLCYLIVAASFYVHVDSNSEDQPVP 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00485 433 Pfam Sodium/calcium exchanger protein 88 243 IPR004837 GO:0016021|GO:0055085
Aip01g00485 433 Pfam Sodium/calcium exchanger protein 278 418 IPR004837 GO:0016021|GO:0055085
Aip01g00485 433 Gene3D - 115 256 IPR044880 -
Aip01g00485 433 Gene3D - 263 421 IPR044880 -
Aip01g00485 433 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 4 428 - -
Aip01g00485 433 TIGRFAM caca2: calcium/proton exchanger 58 419 - -
Aip01g00485 433 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 4 428 IPR004713 GO:0006812|GO:0008324|GO:0016021
Aip01g00485 433 TIGRFAM cax: calcium/proton exchanger 70 420 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00485 Aip-Chr1 6525043 6530049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00485 19 429 Antiporters AT1G55730 70.803 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00485 K07300 - gmx:100799276 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00485 01 6525043 6530049 Aip01g00485 01 6525043 6530049 ECH