Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00468 ATGAGGACGATCAAAGAGTTTTTCTTGAGGCACTACTACTCTCTGTGGTTGTCACCATCACTATCACCACCGTCACACATGAATTCTAACGACGTAGAGAATCACAGGAACAGCGACGTCGCCACAAAACAAAGGAAGATCAACAAAGAGGAGGGGAGAGGCGAATCATCCTCGATTTTCTCGTTCGTGTGCGAAATCTGCATTGACACTAAAACCGAAGCAGAAAATTTCTCTATAACCGGTTGCAGCCACTCATATTGTACGGATTGCGTGGTGAAATACGTTGGTTCTAAACTTGACGACAACGTGATTAATATCCGGTGTCCAGTACCCCGCTGTGGTGGTTTCTTGGAACTCGACGGTTGCCGCGAGGTTCTGCCAAAGATGGTTTTCGATCGGTGGGTTAAGTTATTGTGTGAAGCTGCTGTTGTTGAGAACGAGAGCGAGAGATTCATGTATTTCCCCTTCAAGGACTGCTCTACCCTTATATCATCGACGATGATTCACCGACGGAATCAGAATGCCCTAGTTATAATAGGCAGATATGCATCACGTGCGAGGCAGTTTGACATCATGGGATCACATGCGAGGAATTTGGGAGGACAAATAATAAATATAGAGTAG 624 0.4551 MRTIKEFFLRHYYSLWLSPSLSPPSHMNSNDVENHRNSDVATKQRKINKEEGRGESSSIFSFVCEICIDTKTEAENFSITGCSHSYCTDCVVKYVGSKLDDNVINIRCPVPRCGGFLELDGCREVLPKMVFDRWVKLLCEAAVVENESERFMYFPFKDCSTLISSTMIHRRNQNALVIIGRYASRARQFDIMGSHARNLGGQIINIE 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00468 207 SUPERFAMILY RING/U-box 62 141 - -
Aip01g00468 207 Pfam Zinc finger, C3HC4 type (RING finger) 64 109 IPR018957 GO:0046872
Aip01g00468 207 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 47 166 IPR031127 GO:0004842|GO:0016567
Aip01g00468 207 ProSitePatterns Zinc finger RING-type signature. 82 91 IPR017907 -
Aip01g00468 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 147 IPR013083 -
Aip01g00468 207 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 47 166 - -
Aip01g00468 207 MobiDBLite consensus disorder prediction 27 52 - -
Aip01g00468 207 ProSiteProfiles Zinc finger RING-type profile. 64 112 IPR001841 -
Aip01g00468 207 MobiDBLite consensus disorder prediction 32 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00468 Aip-Chr1 6197413 6198036 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00468 64 160 C3H Transcription Factor Family AT2G31760 26.263 1.10e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00468 K11975 - aip:107607785 204.912