Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00430 ATGAAGTGGGAAGTAGAAGTACTCTCTCCTTCTTCACCTTATGTTCATCATAACAACACAACTCATTGGTTTCTTGGAGATAACAACATCATCAACAACAACAACAACAACAATAATAGGAGCAGCACAAAATGGACCCATGAAGAGAACAAATTGTTTGAGAATGCTCTTGCTTTGCATGATAAGGATACACCAGATAGGTGGCACAGGGTAGCTGAGATGATTCCAGGGAAAACTGTTCTTGATGTGATGAAGCAGTACCATGAATTGTTAGCAGATGTTAGTGATATTGAAAATGGGTTGGTACCAATTCCAGGTTACAGTACCAGCACAACAACAACTACTTCACCTTTTACATTGGATTGGGTCAACAATAATTGTTCTGGGTATGATGGGTTTAAAGGAATTGGTGCTGCTGCAAAGAGATCTTCAAAAACACCAGAACAAGAGAGGAAGAAAGGTGTGCCTTGGACTGAAGAAGAGCATAAATTGTTCCTACTTGGTCTAAAGAAGTATGGCAAAGGCGATTGGAGGAACATTTCGCGCAACTTCGTGATCACTCGGACGCCAACTCAGGTGGCGAGCCATGCTCAGAAGTACTTCATCCGACAACTCTCCGGCGGCAAAGACAAGAGGAGGGCAAGCATCCATGACATAACAACAGTTAATCTCACAGACAACAACAACAGAACACTTGCTAATCCTTCCTCAGAAGATAGCAGCAAGAGATCCACTTCACCACAACACCATCATTCCATGGTGTTCTCAAATTCAAATCCTATAGGGAAATTCCAATGGAACAATAATATTAATAATGATAATGATGATACTAAGTCAAATTCAGGAGGAGGAGTATCTACTATGAGATTCAACAATGATGATGAAGCTTTTATGTCTCATCATTATGGTGTTAATTCCTCCTATGGTTTTAAGATGCAGGGTCAGAATATGCATAAAAGTGCTCTTAATCAGTCTTCTTACTTAGCACTTCAGACACAAAACATTGCTTTCCAAATGTAG 1020 0.401 MKWEVEVLSPSSPYVHHNNTTHWFLGDNNIINNNNNNNNRSSTKWTHEENKLFENALALHDKDTPDRWHRVAEMIPGKTVLDVMKQYHELLADVSDIENGLVPIPGYSTSTTTTTSPFTLDWVNNNCSGYDGFKGIGAAAKRSSKTPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTDNNNRTLANPSSEDSSKRSTSPQHHHSMVFSNSNPIGKFQWNNNINNDNDDTKSNSGGGVSTMRFNNDDEAFMSHHYGVNSSYGFKMQGQNMHKSALNQSSYLALQTQNIAFQM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00430 339 ProSiteProfiles Myb-like domain profile. 37 91 IPR001005 -
Aip01g00430 339 ProSiteProfiles Myb-like domain profile. 149 201 IPR001005 -
Aip01g00430 339 SUPERFAMILY Homeodomain-like 150 204 IPR009057 -
Aip01g00430 339 Pfam Myb-like DNA-binding domain 44 91 IPR001005 -
Aip01g00430 339 Pfam Myb-like DNA-binding domain 156 201 IPR001005 -
Aip01g00430 339 Gene3D - 36 104 - -
Aip01g00430 339 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 319 IPR043363 -
Aip01g00430 339 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 319 - -
Aip01g00430 339 SUPERFAMILY Homeodomain-like 43 99 IPR009057 -
Aip01g00430 339 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 152 204 IPR006447 GO:0003677
Aip01g00430 339 Gene3D - 155 205 - -
Aip01g00430 339 ProSiteProfiles SANT domain profile. 40 87 IPR017884 -
Aip01g00430 339 ProSiteProfiles SANT domain profile. 157 205 IPR017884 -
Aip01g00430 339 SMART sant 41 93 IPR001005 -
Aip01g00430 339 SMART sant 153 203 IPR001005 -
Aip01g00430 339 MobiDBLite consensus disorder prediction 218 287 - -
Aip01g00430 339 CDD SANT 156 201 IPR001005 -
Aip01g00430 339 MobiDBLite consensus disorder prediction 212 287 - -
Aip01g00430 339 CDD SANT 44 91 IPR001005 -
Aip01g00430 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 205 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00430 Aip-Chr1 5514319 5516973 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip01g00430 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00430 - - cam:101514273 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00430 01 5514319 5516973 Aip01g00430 01 5514319 5516973 ECH
Aip01g00430 01 5514319 5516973 Aip07g00912 07 10944168 10946212 ECH
Aip07g01531 07 27833195 27834764 Aip01g00430 01 5514319 5516973 ECH
Aip02g02208 02 93097627 93100764 Aip01g00430 01 5514319 5516973 ECH