Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00420 ATGAACATTCCTCGTCGGAACTTGCCCGGATCATTGGTCCGACCCGAATCTGAAATCTCCGGCGAGTTGGACAGCGGCCTCTTCTTCCCTCTCCGGAATGATATATTCCCCTGCACCGCGTGCGGCGAGATCTTCCAGAAGCCGCTCCTACTGGAGCAGCATCAATCTACGAAGCACGCGGTGTCGGAGCTACCCGGATCCGACCCCGGTCATAACATAGTCCAGATCATATTCAAGTCGGGTTGGCCCGAGATCCGAAAGTTCCCGACCATAACCCGGATCCTTAAGATCCATAACAGCCAAAAGATTCTCTCGCGGTTCGAGGAGTATCGCGAGGCTGTCAAGGAGAGGGCCGCACTTCACGGCGGCATAATGTCCACGCGCCGCCGTGACGAGCGGTGCCTCGCCGATGGCAATGAGCTTATGAGGGTTTTCGCCCAAATTAGATGGAATTTCCACCGAGCCATGCTGGTTTGCAGAGTAATTGCGGGTCGGATTGGATCGGATTCAGACGAAGCAGAAAAGGAGGATGGTGGGAGTTTCGACTCCGTGATGGCACGTGGCGGCGACAGCGGCGTGTACACTCGGCTAGACGAGGAGGAACTTTTGGTGTTTAATCCTAGGGCTGTGCTTCCTTGCTTTGTGATTGTGTATAGTGTGTGA 663 0.5505 MNIPRRNLPGSLVRPESEISGELDSGLFFPLRNDIFPCTACGEIFQKPLLLEQHQSTKHAVSELPGSDPGHNIVQIIFKSGWPEIRKFPTITRILKIHNSQKILSRFEEYREAVKERAALHGGIMSTRRRDERCLADGNELMRVFAQIRWNFHRAMLVCRVIAGRIGSDSDEAEKEDGGSFDSVMARGGDSGVYTRLDEEELLVFNPRAVLPCFVIVYSV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00420 220 SUPERFAMILY ADP-ribosylation 61 219 - -
Aip01g00420 220 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Aip01g00420 220 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 15 143 - -
Aip01g00420 220 Gene3D - 129 219 - -
Aip01g00420 220 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 150 219 - -
Aip01g00420 220 PANTHER NUCLEIC ACID BINDING PROTEIN 15 143 - -
Aip01g00420 220 PANTHER NUCLEIC ACID BINDING PROTEIN 150 219 - -
Aip01g00420 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 64 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00420 Aip-Chr1 5338666 5339502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00420 151 220 C2H2 Transcription Factor Family AT2G29660 55.405 5.59e-17 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip01g00420 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00420 - - aip:107608029 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00420 01 5338666 5339502 Aip01g00420 01 5338666 5339502 ECH