Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00418 ATGTGTCGGTTAGGGCTTCCTTTAACAGCCATAGATAGGTTCTTATGTAGCCAACAACAAAGTCAAGTCCTTCACAATGATGATAGTGTTTTTGATGAAGATTTTCAAACTAGGTTTTCTAATTGTTATTATGGTGGTGGTGGTTCAAATAACTCTTATTATAAGCTTGTGTGGCCTAATTGCACTACTCATCAAGAAGCAAGCATTGTTGTTCATGATAATAATCAACAAGAGGGTTTCAATAATTGGCTACAACAAATTCCCACATTGTGTCACAATCAAGAAGATGTTCATCAAGCTTTAGGGAAAACTAATAATGTCAAAGTTGTGGGAAGAAACCCTAAAAAAGCTTCTTCTTCTTCTGTATCCTTCATCAAAGGACAATGGACTCCTGAAGAAGACAGGAAATTGGAGAAGCTGGTGAAACAACATGGAACAAGGAAGTGGTCACAAATAGCTGAAAAATTGGAGGGAAGGGCTGGGAAGCAATGTAGAGAGAGGTGGCATAATCATCTCCGACCAGATATTAAGAAAGACGGTTGGAGTGAAGAAGAAGAAAGGATATTGGTGGAAACTCATGCCAAGGTTGGAAATCGTTGGGCAGAAATCGCGAAGCATATACCAGGGCGAACTGAAAACTCGATCAAGAACCATTGGAACGCAACAAAGAGAAGGCAGAACTCAAGGAGAAAGAACAAGAAGCCATCATCATCATCAACCAACTCAAACAATAATGGCAAACCACAATCTTCAATTCTCCAAGACTACATTAGAAGCCAAACCCTAATTGGTACCAATAATATCAATGCTCCTATTACCACTACTAATTCAACCCCAACTATTACTAGTGAATCTGAATCTACCACTAATATTAGTGATAATAATAATCCATATTATTCATCACCAACAATCATAGCTGAATCATATGATGATGAGTTGCTCTTCATGCAACAACTTTTCAAAGAGAATAATCAAAAT 978 0.3763 MCRLGLPLTAIDRFLCSQQQSQVLHNDDSVFDEDFQTRFSNCYYGGGGSNNSYYKLVWPNCTTHQEASIVVHDNNQQEGFNNWLQQIPTLCHNQEDVHQALGKTNNVKVVGRNPKKASSSSVSFIKGQWTPEEDRKLEKLVKQHGTRKWSQIAEKLEGRAGKQCRERWHNHLRPDIKKDGWSEEEERILVETHAKVGNRWAEIAKHIPGRTENSIKNHWNATKRRQNSRRKNKKPSSSSTNSNNNGKPQSSILQDYIRSQTLIGTNNINAPITTTNSTPTITSESESTTNISDNNNPYYSSPTIIAESYDDELLFMQQLFKENNQN 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00418 326 CDD SANT 129 172 IPR001005 -
Aip01g00418 326 SMART sant 177 225 IPR001005 -
Aip01g00418 326 SMART sant 125 174 IPR001005 -
Aip01g00418 326 Gene3D - 125 177 - -
Aip01g00418 326 ProSiteProfiles Myb-like domain profile. 126 172 IPR001005 -
Aip01g00418 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 176 IPR017930 -
Aip01g00418 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 227 IPR017930 -
Aip01g00418 326 ProSiteProfiles SANT domain profile. 176 227 IPR017884 -
Aip01g00418 326 ProSiteProfiles Myb-like domain profile. 173 223 IPR001005 -
Aip01g00418 326 PANTHER TRANSCRIPTION FACTOR MYB119-RELATED 100 292 - -
Aip01g00418 326 CDD SANT 181 223 IPR001005 -
Aip01g00418 326 Gene3D - 179 251 - -
Aip01g00418 326 MobiDBLite consensus disorder prediction 268 295 - -
Aip01g00418 326 MobiDBLite consensus disorder prediction 233 250 - -
Aip01g00418 326 MobiDBLite consensus disorder prediction 207 250 - -
Aip01g00418 326 SUPERFAMILY Homeodomain-like 123 219 IPR009057 -
Aip01g00418 326 Pfam Myb-like DNA-binding domain 129 186 - -
Aip01g00418 326 PANTHER MYB PROTEIN-RELATED 100 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00418 Aip-Chr1 5303738 5306131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00418 120 320 MYB Transcription Factor Family AT5G58850 59.804 3.93e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip01g00418 Myb_DNA-bind_6 2.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00418 K09422 - gmx:100786295 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00418 01 5303738 5306131 Aip01g00418 01 5303738 5306131 ECH