Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00416 ATGTATGGTTGTCATTCTTGTTGGGGGCGGGAGAGCGAAGAGGAAAATGATAGTGCGAAGGGTAATGAAATTGGTGCTGATGAAAATCAAGGTGTATTGCGGAAACCTGAACTTGTGAAATCCCTTTGGAATCTGAAAAAGGAAGGTTTTCCACTGCCAGATGTTTTGTCAGTAAATTGTACATCCCTTGCCAATACATCTGATATTTTCACCAAGGTAGGAGGAAACCAAAGCATATATTATTGTAGTCTTGTTTGCTTCCAATCACGGGGAAAAAGGGTTTTGGCAACACCCTTGCAACAACTTCATAACATGTATTCACAGAAATCTTCTACCAGGAATATGATGTTGATAGTTGCTGATGAGTTAGATTACCTAATAACCAGAGACCGGGCTGTGCTCCATGACCTTTTCATGCTTACCCCCTTCCCATTTGCCAGATGTATATTAATAGGGGTAGCAAATGCCATTGACCTAGCTGATCGATTTCTTCCAATGCTTACATCTCTTAATTGCAAGCCTACTGTTGTAACTTTTTGTTCCTACTCTAAAGATCAAATCCTTAGGATTCTTGAAGAAAGGCTAAATGAACTTCCTTACACTGTCTTTCAACGTCAAGCACTAGAACTATGTGCTAGGAAAGTTGCTGCAGCTTCTGGGGATATGCGGAAAGCTCTTTGCATTTTTAGGAGTGCGATAGAGATGCTAGAAGCAGAAGTTAGAGAATCTGTATTCAATTGGAAGAGAAATCATCCTCTAAACAAAATATGGCTACAATCCATTGATCATATGGCTCGTGCTTTGTCAAACACATATAGATCACCAGTGGTGGATTCTATACAATCTTTGCCACATCATCAACAGATTATACTTTGCTCATCCATGAAACATTTCTGTGGATCTAAGAAAGATACAATCCTTGGAGAGCTATATAAATCTTACTCTGAGTTATGCAAATCATCATTGATTCTCCCAACAGGAATCTTGGAATTCTCAAACATGTGCAGAGTGCTTAATGACCAGGGGCTCATTAAACTAGGACCATCACGAGAGGATAAATTGAAAAGGGTAACACTAAAAGTTGACAAGGCCGATATTACTTTTGCATTGCAGGGAATCCGATTTTTTAGAAATTTCTTCAATGATCCACTCATGATTGATAAAGGTTATTTCATTATATATGAAATTGCTTGGGAATTGGGAAGAATAGGAAACTCTAAAACGGCTAACGAAGCCCCGATCCCACCTGAGAGTTTAAGACCTAGTCCTCTCAATCTCACACAGCGACTTAGAGAGGCTCACACCACCGGCCGATTGCTGCAATGTTGTCGGGTACTGTCTCGTCCCGTCGGCCCCTGTACATCTCCTTCATTGACTCGTCGCCTGCTGTGCGTCTCTTCGTCGCCATGCTTGGTTTCCGATCTCCCTCTTCTCTACCCACTGCTGAGTGCAAATTGCATCAGCTCTTCCAAGTTCCAAAGGTCCTGCTCCGCAGTTCTTGCCCGTCGTCCATCCGTCGTGTGCGTCGTCAGTGTTCGTCGCCAGCTCGCCGTCGTCCGTCACCAGCTCGCCAGTGTTTGTCGCCAGCTTCCCGCACACATAAATTTCGTAAAACTGACGCAGTTTTTTTCTCTGCTCCATCTTCGCTCTCACACAGTCACACTCCTCTTCCTTTCACTGCCGGCCCCGGAGTCACAACCACCACCACCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGTCTCTTCTCGAACCGCCAAACCCTCAAACCCCAGAAACCCCCCTCGAAACCCTCCATTCCCTTCGACATTCACAAGTGGGACCCTCATTTCCTCCCCCAAAACCCCTCACCACCTCCTTCCCCGTCTCCTTCATTCTCATTCTCCTCCTCCCCTCGCCTCTCTCCCATCGCCCGATTCATCATCGACGCATTCCGCAAGAACCGCCACACCTGGGGCCCCTCCGTGGTTTCCGAGCTCAACAAACTCCGTAGGGTCCCACCCACCCTCGTTGCTGAGGTTCTCAAGCTCCAAACAAACCCTACCCTCGCCTCCAAATTCTTCCATTGGGCTGGTAAGCAGAAAGGCTTCCACCATAATTTTGCATCCTATAATGCTTTTGCTTATTGCTTGAACCGTAGCAATCGGTTCCGGGCAGCTGACCAGCTGCCCGAACTTATGGACTCGCAGGGGAAACCCCCCAGTGAGAAGCAGTTTGAGATTTTGATTAGAATGCATTCTGATGCCAATAGGGGACTTAGGGTTTACTATGTGTATGAGAAGATGAAGAAGTTTGGCGTTAAGCCTAGGGTATTTTTGTATAATAGGGTTATGGATGCGTTGGTAAAGACGGATCATTTGGATCTTGCGCTCTCGGTTTATGACGATTTTAGGGAGGATGGATTGGTGGAAGAGGCTGTTACTTTCATGATTTTGATTAAGGGGCTGTGTAAGGCCGGGCGAATCGACGAAATGCTGGAGGTTTTGGAGAGAATGAGAGTGAATTTGTGCAAGCCGGACGTGTTTGCTTATACCGCTTTGGTTCGGATGCTGGTTCCGGAGGGAAATTTGGATGGTTGTTTGAGGGTTTGGGAAGAAATGAAGAAGGATAAGGTTCAGGCTGATGTGATGGCTTATGCTACTATAATTATAGGGTTGTCGAAAGGAGGGAGGGTTGAAGAGGGTTATGAGTTCTTCAAGGAGATGAAGAGTAAGGGTCATTTGATAGATAGAGCTATATATGGGTCACTTATAGAGTCGTTTGTGGCGGAAAAGAAGATTGGTGTGGCTTTCGATTTGTTGAAGGATTTGGTTAACTCAGGATATAGGGCGGATTTAGAAATTTATAATTCCCTTATTGAAGGCTTGTGCAATGTGAATAAGATTGAGAAGGCTTACAAGCTTTTCCAAGTTACTATTAAGGAGGGCCTTGAGCCAAATTTTTTATCAGTGAAACCATTGTTGCTGTGTTATGCTAAAGCAAAAAAAATGGAAGAACTCTTCAAGCTTCTCAAGCAGATGGAGAAGTTAGGTTTTCCAGTTATTGATGATCTTGCCAAATTCTTATCCCTTCTGGTGAAGGAGGGACCATTAGTAGCATTAGAGGCTTTTACACACTTGAAGGCAAAAGGTTATATTAGTGTCGAAATGTACAATATTCTTATGGATTCTCTACACAAGGTTGGTGAGATAAAGAAGGCTCTATTACTCTTTGACGAAATGAATGCCTCAAACTTGAAACCTGACTCATTTACATACAGTATAACAATTCTATGCCATGTTGATCTTGGTAAAATTCAGGAGGCATGTGAGTATCACAATAAGATCATTGAGATGTCTTGTATTCCTTCTGTTGCTGCTTACAGTTTCCTTGCCAAGGGGCTTTGTAAAATTGGCGAGATTGATGCAGGTATGATGCTTGTCCGTGATTGCCTTGCCAACATAGACAGTGGTCCTATGGAATTCAAATATAGTCTTACCATCATTCACTCATGTAAGTCAAATGATGCCGAGAAAGTGATTGAAGTATTGAATGAGATGATGCAACAGGGTTGCCCTCTGGACATTGTGGCATGTGCTGCAGTTATATCTGGCATGTCTAAGCACGGAACAATTGAAGAGGCCAGGAAGGTTTTTTCAAACTTGAGGGATCGCAGATTGTTAACCGAAGCTGACACCATTGTGTATGACGAATTACTAATCAATCACACAAAGCAAAGGACCGCAGACTTGGTGCTATCAGGAATTAAGCTCTTCGGTTTAGAATCTAAACTAAAATCAAAGGGTTTTAAGTTTTTGCCAAGTTGA 3816 0.4334 MYGCHSCWGRESEEENDSAKGNEIGADENQGVLRKPELVKSLWNLKKEGFPLPDVLSVNCTSLANTSDIFTKVGGNQSIYYCSLVCFQSRGKRVLATPLQQLHNMYSQKSSTRNMMLIVADELDYLITRDRAVLHDLFMLTPFPFARCILIGVANAIDLADRFLPMLTSLNCKPTVVTFCSYSKDQILRILEERLNELPYTVFQRQALELCARKVAAASGDMRKALCIFRSAIEMLEAEVRESVFNWKRNHPLNKIWLQSIDHMARALSNTYRSPVVDSIQSLPHHQQIILCSSMKHFCGSKKDTILGELYKSYSELCKSSLILPTGILEFSNMCRVLNDQGLIKLGPSREDKLKRVTLKVDKADITFALQGIRFFRNFFNDPLMIDKGYFIIYEIAWELGRIGNSKTANEAPIPPESLRPSPLNLTQRLREAHTTGRLLQCCRVLSRPVGPCTSPSLTRRLLCVSSSPCLVSDLPLLYPLLSANCISSSKFQRSCSAVLARRPSVVCVVSVRRQLAVVRHQLASVCRQLPAHINFVKLTQFFSLLHLRSHTVTLLFLSLPAPESQPPPPXXXXXXXXXXXXXGLFSNRQTLKPQKPPSKPSIPFDIHKWDPHFLPQNPSPPPSPSPSFSFSSSPRLSPIARFIIDAFRKNRHTWGPSVVSELNKLRRVPPTLVAEVLKLQTNPTLASKFFHWAGKQKGFHHNFASYNAFAYCLNRSNRFRAADQLPELMDSQGKPPSEKQFEILIRMHSDANRGLRVYYVYEKMKKFGVKPRVFLYNRVMDALVKTDHLDLALSVYDDFREDGLVEEAVTFMILIKGLCKAGRIDEMLEVLERMRVNLCKPDVFAYTALVRMLVPEGNLDGCLRVWEEMKKDKVQADVMAYATIIIGLSKGGRVEEGYEFFKEMKSKGHLIDRAIYGSLIESFVAEKKIGVAFDLLKDLVNSGYRADLEIYNSLIEGLCNVNKIEKAYKLFQVTIKEGLEPNFLSVKPLLLCYAKAKKMEELFKLLKQMEKLGFPVIDDLAKFLSLLVKEGPLVALEAFTHLKAKGYISVEMYNILMDSLHKVGEIKKALLLFDEMNASNLKPDSFTYSITILCHVDLGKIQEACEYHNKIIEMSCIPSVAAYSFLAKGLCKIGEIDAGMMLVRDCLANIDSGPMEFKYSLTIIHSCKSNDAEKVIEVLNEMMQQGCPLDIVACAAVISGMSKHGTIEEARKVFSNLRDRRLLTEADTIVYDELLINHTKQRTADLVLSGIKLFGLESKLKSKGFKFLPS 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00416 1271 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 843 877 IPR002885 -
Aip01g00416 1271 Gene3D - 170 280 - -
Aip01g00416 1271 Gene3D - 37 169 IPR027417 -
Aip01g00416 1271 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 878 912 IPR002885 -
Aip01g00416 1271 MobiDBLite consensus disorder prediction 586 633 - -
Aip01g00416 1271 TIGRFAM PPR: pentatricopeptide repeat domain 1168 1191 IPR002885 -
Aip01g00416 1271 TIGRFAM PPR: pentatricopeptide repeat domain 1053 1086 IPR002885 -
Aip01g00416 1271 TIGRFAM PPR: pentatricopeptide repeat domain 776 806 IPR002885 -
Aip01g00416 1271 TIGRFAM PPR: pentatricopeptide repeat domain 846 878 IPR002885 -
Aip01g00416 1271 TIGRFAM PPR: pentatricopeptide repeat domain 951 983 IPR002885 -
Aip01g00416 1271 TIGRFAM PPR: pentatricopeptide repeat domain 810 844 IPR002885 -
Aip01g00416 1271 TIGRFAM PPR: pentatricopeptide repeat domain 881 913 IPR002885 -
Aip01g00416 1271 Gene3D Tetratricopeptide repeat domain 1027 1150 IPR011990 GO:0005515
Aip01g00416 1271 Pfam PPR repeat 1168 1188 IPR002885 -
Aip01g00416 1271 Pfam PPR repeat 776 805 IPR002885 -
Aip01g00416 1271 Pfam PPR repeat 1197 1221 IPR002885 -
Aip01g00416 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 247 IPR027417 -
Aip01g00416 1271 SUPERFAMILY HCP-like 893 1116 - -
Aip01g00416 1271 Gene3D Tetratricopeptide repeat domain 649 836 IPR011990 GO:0005515
Aip01g00416 1271 PANTHER OS07G0179000 PROTEIN 583 1255 - -
Aip01g00416 1271 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1191 1225 IPR002885 -
Aip01g00416 1271 SMART Cdc6_C_2 291 370 IPR015163 -
Aip01g00416 1271 Pfam PPR repeat family 809 854 IPR002885 -
Aip01g00416 1271 Pfam PPR repeat family 1051 1095 IPR002885 -
Aip01g00416 1271 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 773 807 IPR002885 -
Aip01g00416 1271 SUPERFAMILY "Winged helix" DNA-binding domain 276 379 IPR036390 -
Aip01g00416 1271 CDD Cdc6_C 284 366 IPR015163 -
Aip01g00416 1271 Pfam Pentacotripeptide-repeat region of PRORP 859 1011 IPR033443 -
Aip01g00416 1271 Pfam CDC6, C terminal winged helix domain 291 369 IPR015163 -
Aip01g00416 1271 PANTHER ATPASE EXPRESSION PROTEIN 3 583 1255 - -
Aip01g00416 1271 Gene3D Tetratricopeptide repeat domain 837 928 IPR011990 GO:0005515
Aip01g00416 1271 Gene3D Tetratricopeptide repeat domain 929 1026 IPR011990 GO:0005515
Aip01g00416 1271 Gene3D Tetratricopeptide repeat domain 1155 1248 IPR011990 GO:0005515
Aip01g00416 1271 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1050 1084 IPR002885 -
Aip01g00416 1271 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 948 982 IPR002885 -
Aip01g00416 1271 Gene3D - 281 371 IPR036388 -
Aip01g00416 1271 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 808 842 IPR002885 -
Aip01g00416 1271 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1085 1119 IPR002885 -
Aip01g00416 1271 MobiDBLite consensus disorder prediction 615 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00416 Aip-Chr1 5167383 5183364 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00416 46 378 Core DNA Replication Machinery Family AT2G29680 62.018 2.24e-132 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00416 - - aip:107644886 1332.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00416 01 5167383 5183364 Aip01g00416 01 5167383 5183364 ECH