Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00407 ATGGGAAAGTGCTCCTTTCAGGATTCCCTCAAAACTTTGGAAGCTGATATTCAGTATGCTAATACACTGGCATTAAGTAATCCAAGGGATAAAGATGGAGGATGCTATCAGATGAGACTATCATACAGTCCAGCAGCCCCCATTTTTCTGTTTCTTGTTCAGTGGGCAGATTTTCGCCTTGCTGCTGCTCTTGGTCTCCTCAGAATCCTAATTTACGTGAACTGTGGAAGTGGGAAGAATACCATGTCAATATATGAAAGGAAAGCAAGTATTAGGCAATTTTACTCTGTGATATTCCCTGCTTTATTACAACTCCAGAAAGGGATCACGGATTTGGAGGAAAGAAAACAGAAGGAAATGTATTTGCTTAGGTACCAAAGTAAAAGTGATTTTGAAGAGAAAGGAGGAGAATATGAAATTGACAATGAAAGAGAAGAGGAATGTGGTGTTTGCTTGGAGGTGAAAGGGAAAGTTGTGCTGCCTAATTGCTGCCACACTATGTGTTTGAATTGCTACAGATCTTGGTTTGTGAGGTCTGAGTCTTGCCCCTTCTGTAGGGATAGCCTAAAGAGAATGGACTCTGGTGACCTTTGGATTTACACAGACAAGAGTGACATTGTTGATGTTGGCACAATTTACAGAGAGAATTCCAAGATGCTATTTCTGTATATAGAGAAGTTGCCCCTTGTAATTCCTGACCCAAGACATGTATCCTATGATCCATTCCTAAGGTGA 735 0.4082 MGKCSFQDSLKTLEADIQYANTLALSNPRDKDGGCYQMRLSYSPAAPIFLFLVQWADFRLAAALGLLRILIYVNCGSGKNTMSIYERKASIRQFYSVIFPALLQLQKGITDLEERKQKEMYLLRYQSKSDFEEKGGEYEIDNEREEECGVCLEVKGKVVLPNCCHTMCLNCYRSWFVRSESCPFCRDSLKRMDSGDLWIYTDKSDIVDVGTIYRENSKMLFLYIEKLPLVIPDPRHVSYDPFLR 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00407 244 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 244 - -
Aip01g00407 244 SUPERFAMILY RING/U-box 147 191 - -
Aip01g00407 244 ProSitePatterns Zinc finger RING-type signature. 163 172 IPR017907 -
Aip01g00407 244 Pfam Zinc finger, C3HC4 type (RING finger) 145 191 - -
Aip01g00407 244 SMART ring_2 148 185 IPR001841 -
Aip01g00407 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 195 IPR013083 -
Aip01g00407 244 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Aip01g00407 244 PANTHER RING FINGER PROTEIN 41, 151 1 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00407 Aip-Chr1 5027148 5029966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00407 60 217 C3H Transcription Factor Family AT1G04360 24.540 1.59e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00407 - - gmx:100808567 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00407 01 5027148 5029966 Aip01g00407 01 5027148 5029966 ECH