LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip01g00401	ATGGCGAAAACGACGTCGTTACTCCTCTGCTCTCTTCTCCTCTTTGGAACCCTAGCTCTAATCCAGGCGAAGAAGGATTTGAAAGAAGTCACACACAAGGTTTACTTTGATGTTGAGATTGACGGAGAGCCTGCAGGTCGAATTGTAATGGGCCTTTTTGGAAAGACAGTTCCTAAGACAGCAGAAAACTTTCGAGCTCTTTGCACAGGTGAGAAGGGAACTGGAAAAAGTGGAAAGCCTCTTCATTTCAAAGGTAGCTCATTCCATAGGATCATACCTAGCTTTATGATCCAGGGAGGTGATTTTACACATGGAAATGGAATGGGTGGAGAATCAATTTATGGAGAGAAGTTTGCTGACGAGAACTTTAAGCTAAAGCACACTGGACCAGGACTTCTATCAATGGCAAATGCTGGTCCTGATACCAATGGTTCACAGTTCTTCATTACTACTGTTACAACTAGCTGGTAA	471	0.4331	MAKTTSLLLCSLLLFGTLALIQAKKDLKEVTHKVYFDVEIDGEPAGRIVMGLFGKTVPKTAENFRALCTGEKGTGKSGKPLHFKGSSFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSW	156

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip01g00401	156	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	52	67	IPR002130	GO:0000413\|GO:0003755
	Aip01g00401	156	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	88	100	IPR002130	GO:0000413\|GO:0003755
	Aip01g00401	156	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	131	146	IPR002130	GO:0000413\|GO:0003755
	Aip01g00401	156	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	146	156	IPR002130	GO:0000413\|GO:0003755
	Aip01g00401	156	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-2	23	156	-	-
	Aip01g00401	156	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	36	155	IPR002130	GO:0000413\|GO:0003755
	Aip01g00401	156	Gene3D	-	20	156	IPR029000	-
	Aip01g00401	156	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	83	100	IPR020892	GO:0003755\|GO:0006457
	Aip01g00401	156	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	23	156	-	-
	Aip01g00401	156	SUPERFAMILY	Cyclophilin-like	29	156	IPR029000	-
	Aip01g00401	156	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	35	156	IPR002130	GO:0000413\|GO:0003755
	Aip01g00401	156	PIRSF	Peptidylpro_ismrse	18	156	IPR024936	GO:0003755

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip01g00401	Aip-Chr1	4948741	4952155	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip01g00401	46	149	U-box Gene Family	AT5G67530	50.476	1.36e-23	94.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip01g00401	K01802		-	aip:107606811	315.079