Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00398 ATGATGAAGACAACACCACCACCCTCTTATTCTTACCACACACACTCCTTCTTTTTCTTAACCGTCATTCTCATCATAACCGCCGCAAATGCCATCGGCTCCGCATCCACCACCGCCGTCATCTACGCCTCATCCACAGTCTGCGCCATCGTTGCCGGCGACGTCAAACAATACATCCACTGCTACCAACAAAACCAGCACAAGAATTCTCATTATTATTATTATGGAGATGTTGCACCGGTGGATGAGGTGGTTCCACACGTGTCCTTTGAATCCATCTCCGGCGGTCGGAGCTTCTTCTGCGGTCTCCGGTCCGGTGGACTCAGCCTCCTTTGCTGGGACGTGGACGGCGGAGCATCGGTATTGGTGCCGAAGAGGATCTTCCACAGTGACGTGGTGCAGTTAACTGATCTAACTGTTGGTGATTCTCAGGTTTGTGCTAGAGAGTCTCAGTCTGGTGTGGTAAGGTGTTGGAGAGGAGGCCGCATTGAAAATGGATTCAAGTTTTATTCACCTGGTAAGGACCTTAGGTTCAAAAGCATCACTTCAGGGTCTGGTTTCTCTTGTGGGGTGTTAATGGATAATGGAAAGGTTCATTGTTGGGGTAACAATATTAGTAGTAAAATTCAAGCACAATTTGATAACATTTCTATGTCAAAGGTGGTTGCTGGAGTGTCACATGTTTGTGGCTTAACAATCTATGATGAGTACTTAATTTGCAAAGGGAACAATGATTCCGGCCAATTGGGTCTTAATTTAAATTCAAGTTCTTATTATTCAGAGTTTTCAGAACTTGCATTGGGAGAAGATTTCACTTGTGGTATTAGAAGAAAAAATGGATTTGTCCTATGTTGGGGTGGTGCTGAAGATACCAAAAAGTTTGATTTGTTTAATAATGTTTCTTTTGAGTCAATTGTAGCTGGTTTGGATTTTGTTTGTGGGGTAACAACTATAAATTTGTCTTTGATTTGTTGGGGTCCTGGTTGGTCTAATAATAATGGTACTAATTATGAGATTCCATTGGGAATTGTTCTTCCTAGTCCATGTGTTAGAGGTGGTTGTGATTCTTCTTGTGCTTCATATCCAAATTCTGACTATTTGTGTCATGGTTCTGGAACTATTTGCTATTCATGTCAGGATAGTCAAATTCCACTAGTCGTGCCATTGATTTTACCACCACCACTATCATCGTCAACACAAGTTTCTAATGTTCATCACAAAAACATGAGGGTGATTTTGGTCATTTTGATTGTTGGATCAATTGGTGCTTTCTCTGGTTTATGCACTATTCTTTATTTCCTTTGGATTGGAGCTAAAAGACTATTCTTGAAGAAGAGAGATGTTGGTAATTCAGAACAACCTCAAAGAAGTGATGATTCTGATGATGATGCCTATATTGAATTGGCTCCAATGTCAGCGAATCGCGCATCGAATGCAGCATTAGGATCACTGAGGAGACATAGGAGTGTTGGTAGTTCATCATCATCAAAGCATAATTTGGATAAGATTGAGAATTTTTCATTACATGAATTAGTCATAGCCACTAACAATTTTTCAAATGATAACAAGATAGGTTCTGGAAGCTTTGGCTCTGTATACAAAGGGAAGCTAGCCGATGATCGCAAAGTTGCCATCAAAAGAGGAGATATTGTTTCTAGCACAAAGAAGAAATTCCAAGAGAAGGAGATTGCATTTGATTCAGAGTTGTCATTGTTATCGCGGCTTCATCACAAGCATCTTGTGAGACTAATAGGTTTCTGCGAGGAGAATGAAGAGAGGCTCTTGGTTTATGAGTACATGAGCAATGGATCAATCCATGAACATTTACATAACAAGAATAATGTTGAGAAAAATAGTAGCATTTTGAATTCTTGGAAGATGAGGATCAAAATTGCATTGGATGCTGCCAGGGGAATTGAGTACATTCACAACTACGCTGTTCCACCAATTATCCATAGAGATATCAAATCGTCAAATATACTATTGGACTCAAATTGGAATGCTAAGGTTTCTGATTTCGGATTGTCCCTTATTTGGCCGGAGATAGAACAAGATTCGACTTCTATAAAGGCGGTTGGCACAGTTGGTTACATAGATCCGGAATACTATGAATTGAATGTGTTAACAACAAAAAGTGATGTGTATGGTTTAGGAGTGGTTATGTTGGAGCTTCTAACAGGAAAAAGAGTTGTTTTCAAATTAGGTGATGAGAGTAGTCTTGTGGGAATCGTAGAATATGCAAGGCCAAGAATAGCAAAAGGGGAATTATGGAGTATTTTGGATTATAGAATTGAAAAACCTAATGTTAATGAGGTTGAGGCTCTTAAGATTATGACTTTCATTACTATGCATTGTGTGAATTTGGAGGGAAAAGAAAGGCCAGAAATGGCTGAAGTTGTTGCCAACTTAGAAAGGGCATTGGCTTTTTTGGAGGGTAGTTCTAGTACCAGCCTATATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTAAATAA 2535 0.3878 MMKTTPPPSYSYHTHSFFFLTVILIITAANAIGSASTTAVIYASSTVCAIVAGDVKQYIHCYQQNQHKNSHYYYYGDVAPVDEVVPHVSFESISGGRSFFCGLRSGGLSLLCWDVDGGASVLVPKRIFHSDVVQLTDLTVGDSQVCARESQSGVVRCWRGGRIENGFKFYSPGKDLRFKSITSGSGFSCGVLMDNGKVHCWGNNISSKIQAQFDNISMSKVVAGVSHVCGLTIYDEYLICKGNNDSGQLGLNLNSSSYYSEFSELALGEDFTCGIRRKNGFVLCWGGAEDTKKFDLFNNVSFESIVAGLDFVCGVTTINLSLICWGPGWSNNNGTNYEIPLGIVLPSPCVRGGCDSSCASYPNSDYLCHGSGTICYSCQDSQIPLVVPLILPPPLSSSTQVSNVHHKNMRVILVILIVGSIGAFSGLCTILYFLWIGAKRLFLKKRDVGNSEQPQRSDDSDDDAYIELAPMSANRASNAALGSLRRHRSVGSSSSSKHNLDKIENFSLHELVIATNNFSNDNKIGSGSFGSVYKGKLADDRKVAIKRGDIVSSTKKKFQEKEIAFDSELSLLSRLHHKHLVRLIGFCEENEERLLVYEYMSNGSIHEHLHNKNNVEKNSSILNSWKMRIKIALDAARGIEYIHNYAVPPIIHRDIKSSNILLDSNWNAKVSDFGLSLIWPEIEQDSTSIKAVGTVGYIDPEYYELNVLTTKSDVYGLGVVMLELLTGKRVVFKLGDESSLVGIVEYARPRIAKGELWSILDYRIEKPNVNEVEALKIMTFITMHCVNLEGKERPEMAEVVANLERALAFLEGSSSTSLYXXXXXXXXXXXXXXXXXXXXXXXLK 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00398 844 Pfam Regulator of chromosome condensation (RCC1) repeat 179 204 - -
Aip01g00398 844 Coils Coil 843 844 - -
Aip01g00398 844 Pfam Protein kinase domain 519 800 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00398 844 ProSiteProfiles Protein kinase domain profile. 518 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00398 844 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 16 814 - -
Aip01g00398 844 Gene3D Transferase(Phosphotransferase) domain 1 600 815 - -
Aip01g00398 844 SMART serkin_6 518 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00398 844 Gene3D Phosphorylase Kinase; domain 1 489 599 - -
Aip01g00398 844 CDD STKc_IRAK 524 805 - -
Aip01g00398 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 650 662 IPR008271 GO:0004672|GO:0006468
Aip01g00398 844 Gene3D - 29 292 IPR009091 -
Aip01g00398 844 SUPERFAMILY Protein kinase-like (PK-like) 493 803 IPR011009 -
Aip01g00398 844 SUPERFAMILY RCC1/BLIP-II 81 390 IPR009091 -
Aip01g00398 844 ProSitePatterns Protein kinases ATP-binding region signature. 524 546 IPR017441 GO:0005524
Aip01g00398 844 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 16 814 IPR044815 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00398 Aip-Chr1 4895537 4899444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00398 20 807 Receptor kinase-like Gene Family AT3G55950 48.230 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Aip01g00398 Pkinase 1.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00398 - - gmx:100802403 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00398 01 4895537 4899444 Aip01g00398 01 4895537 4899444 ECH
Aip08g00320 08 2393303 2396412 Aip01g00398 01 4895537 4899444 ECH