Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00394 ATGGAATCCAAGATTAATAATAAGACTTGTCAAGAAGGGTTGCACCACAGAATCTCTGCATTGCTTGAGTTTTCAGCCTCAGATGATGTAACAGCGTTCAAGGAAGCTATTGAGAAAGAGGGCCATAACGTTGGTGAGACTGGATTATGGTATGGTAGGAGAATTGGAACAAAGGAAGTTGGATATGAAGAGAGAAACCCTCTTATGATAGCTGCAATGTTTGGCAGCAAGAATGTCTTGTCTTACATTCTCAAAACAGGCAAAGCTGATGTCAACAAATCTTGCGGCTCGGATTCAGCCACGGCGCTCCACTGCGCCGTGGACGGAGCCTCCCCAGCCTCCGCCCAAATTATCAAGTTGTTGCTTGAATCTTCAGCGAATCCTAACGCCGTGGATGCCAGAGGCAACCGGTGCTACGACTTGGTTGTCTCCATGCCGTCCGTCTACAACACAAGAAAGAAGGCCGTACAATCGCTTCTAGAAGGGGCGAACAATGTATATAAGAAGGAGGCAACATCGATTGGAATATCATCAAGCTTGAACGAGAGAGGCAAGGTAGCTGCTGGTACGGCAGAGTTTCCGGTGTCTCCTCGGTATAAAGAGTTTCCGGTGGACCACTCGCTACCGGACATAAAGAACGGTATATATAGCACGGACGAGTTTAGAATGTATACCTTCAAAGTGAAACCATGTTCGAGAGCGTATTCACACGATTGGACAGAGTGTCCTTTCGCGCATCCCGGCGAGAATGCCAAGAGGCGCGACCCGAGGAAATACCAGTACAGCTGCGTTCCCTGTCCGGAGTTCCGGAAAGGGAGCTGCAGCAAAGGAGATTCCTGCGAATACGCGCATGGAATCTTCGAGTGCTGGCTTCACCCGGCTCAATACAGAACAAGGCTGTGCAAGGACGAGATGGCATGTACTAGAAGAGTGTGTTTCTTCGCGCACAAGCCAGAAGAATTACGTCCTCTGTATGCTTGTTCTGGCTCTGCATTGCCTTCTCCCACTTCTTATTCGCCAGGTGGCGCTAATTCATTGGACATTTGTTCATCCTTATCGTCACCAGATGGTGGTGGATCTGGATCTTCACCGGTGTGGCAAGCTCCTCAAGCTAAGCTTCCCAAAAGCAGGCTAAACCTAGCCCTCAGCGCTAGAGATGTTAATCTTGACATCCAGTCGATCGGCCTCGAAAGCCGGCGACTGATGCAAAAGCTTATGATGGAAGAGATGGTTTCATCAGCATTATCTCCCAATTCTTCCACCTGGAGAAACTCGTTGCCTACGAGTCCGTCTTTCGCTTCTCCGGTTCCGTCTCCGACTAATATTTGGGGAAGTGCTTCCAACTATTCTCCTTCACATTCAAAAGTCATTGGATCGCCGGCGGCATACGGCCTGGATCTTTCCGGTGGTGGCGTCTCTTTGCGGAGTCCGAGCGAGATTCCTTCTCCTTCGAAAAACTCCATAGGCATGGAATCATCGTCGTCTACCTTGTTTGGTTGGGGTTCCCCTGATGGAAAATTAGATTGGTCCATTCGCAGAGATGAGTTTAACAAAATGAACAAGTCAAATTCTTTCGCCTTTCGAAGCACTGCTAATCTTGTTGCGACTCCGGAGCTGGCGGAGGATGCTATTGATGAACTAGATGTGTCTTGGGTTAGTTCTCTTGTGAAGGATTCTTCGAGCAACAACTACTCCACCATGTTAACACATGAACAGTTTAATGTCATGTAA 1731 0.4841 MESKINNKTCQEGLHHRISALLEFSASDDVTAFKEAIEKEGHNVGETGLWYGRRIGTKEVGYEERNPLMIAAMFGSKNVLSYILKTGKADVNKSCGSDSATALHCAVDGASPASAQIIKLLLESSANPNAVDARGNRCYDLVVSMPSVYNTRKKAVQSLLEGANNVYKKEATSIGISSSLNERGKVAAGTAEFPVSPRYKEFPVDHSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFAHPGENAKRRDPRKYQYSCVPCPEFRKGSCSKGDSCEYAHGIFECWLHPAQYRTRLCKDEMACTRRVCFFAHKPEELRPLYACSGSALPSPTSYSPGGANSLDICSSLSSPDGGGSGSSPVWQAPQAKLPKSRLNLALSARDVNLDIQSIGLESRRLMQKLMMEEMVSSALSPNSSTWRNSLPTSPSFASPVPSPTNIWGSASNYSPSHSKVIGSPAAYGLDLSGGGVSLRSPSEIPSPSKNSIGMESSSSTLFGWGSPDGKLDWSIRRDEFNKMNKSNSFAFRSTANLVATPELAEDAIDELDVSWVSSLVKDSSSNNYSTMLTHEQFNVM 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00394 576 ProSiteProfiles Ankyrin repeat profile. 98 133 IPR002110 GO:0005515
Aip01g00394 576 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 285 IPR000571 GO:0046872
Aip01g00394 576 SUPERFAMILY Ankyrin repeat 25 146 IPR036770 -
Aip01g00394 576 Gene3D - 261 323 - -
Aip01g00394 576 SMART ANK_2a 63 93 IPR002110 GO:0005515
Aip01g00394 576 SMART ANK_2a 98 130 IPR002110 GO:0005515
Aip01g00394 576 SMART c3hfinal6 295 318 IPR000571 GO:0046872
Aip01g00394 576 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Aip01g00394 576 Gene3D - 14 170 IPR036770 -
Aip01g00394 576 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Aip01g00394 576 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 489 564 - -
Aip01g00394 576 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 9 437 - -
Aip01g00394 576 Pfam Ankyrin repeats (3 copies) 59 132 IPR002110 GO:0005515
Aip01g00394 576 PANTHER UNKEMPT FAMILY MEMBER 489 564 IPR045234 -
Aip01g00394 576 PANTHER UNKEMPT FAMILY MEMBER 9 437 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00394 Aip-Chr1 4818764 4820494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00394 16 561 C2H2 Transcription Factor Family AT5G12850 39.062 8.03e-129 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip01g00394 Ank_2 2.1e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00394 - - aip:107616248 1151.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00394 01 4818764 4820494 Aip01g00394 01 4818764 4820494 ECH
Aip07g01489 07 25887511 25891546 Aip01g00394 01 4818764 4820494 ECH