Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00390 ATGACCTCTCCTGCACCCGCCCTCCACTCCATCCGCGCCTCCCTCTCCGACCTCTGCGCTCCACCGCCGGATCCACGCCGTCCCTTTCACAACCCCCGCTGCTTCTCGGCGTTCGCTCGCCGCCTCCAGCTAGTCCTCGATCAACTCCTCCTCTTACTCCCGCCCACTCCACCGCTGCCCGTTCAGACGGCGCTGAAAGGCATTGCCGGCGACCTATCCAAGGCGGCGGAAACTGTGTCGTTGTACGAAAACGCGAGCAAGATCTTCGTTTTGTTGAACTGCAAAACGCTGTGCTCGTCGCTGCAAGAACAAACCGCCGCTATTTCGGGGTGGCTGGCGTTGCTTGATTCGGGGGTTGAGGAGTTCCCTGAGCTTCAAAAGAAGGTCTTCGATCTTAGCAGAGACATGAAGCTCGCACAATTTAGGGTCACAGAGAATGAAGAGAGGGTGTTGTGTGCATTGGAGAAGGAAGGGCAAGGGAGAGATACAAGCAAAGCAGTGCAGAGTGCCATTATGATGGATTTGGCTCGTGCTTTTGGGGTCGATCCTGATGATCATGCTGAGTTACTCACCCAAGTGAACCTCTTCAAAGACGATGCCTTGCGCTCCAAGTCGGTCCTCGAGACAAGAATTTTGGCTTCCCTGGAGAGAATTCTTAAGAACTGGTCCGTCGAACCTGCCATAGTGACCCGGAATATGGACTTTGATATTGAAGATGATGATGATGCTAATGCTCCAATTATGCCCTTCAAAAATTTCCTTTGCCCATTGACCAAGGAAGTGATGACAGACCCTGTTGTGGTGCTGGAGTCCTCTCAGACCTATGAGAGAACTGCAGTTGAGTACTGGTTTTCGAGGTGCATTGAGAATGGCATCGACCCCATTTGTCCGGTCACTGGAACCGTTCTTAAGTCCTTGGAGCTGAAGCCCAACATTGGCTTGGCAGGGGCAATTGAGGAGTGGATTGGCAGGGTTGTTGAATATCATGTTAAGTCTGCAGCACAGCATCTGATTGAGGAACCGTTGTCTATTGATCACGTCGAGCGAGCGCTGGATAATATTTATAAGGTTTCTGAAGAACACCCCACTAGCAGATATGTTATCAGGAATGCTGGCATTGTGGTATTGATAGTGACTGTTCTTAGCAAGAACTCTAAAACTATTGGATCGCGTTTGAGAAGCAAAGTTCTAATGACTTTACTTAGCATGGCCAAGGACGAAGAAAGCAGGAAAATAATGCTTGAAAGGGGTATCACTAGATTGGCTATACATAGTCTTATTGGGAACTCTGAGAAAGAGAGAGAGTATGCTGTCAAGTTGTTATCAGAGTTCTGCAACGAGGATGATTGTTGCGTAAGAATTGCATTGGAGAAAGGTGCATTAGTTCTTCTGTCAAGTATGGCTGGAAATCTGGAATATCCCTCTCTGTCTAATTTAGCTGAGGAAGTCTTAAAGAAGATGGAGAGAGTGGAAGCTAATGTTCAATGCTTGGCCGCAGCTGGAAGATTTGAACCATTACTTTCACGGTTACGTGATGGTTCTGATGGCGTTAAGATAGAGATGGCCTCTTTGGTGGGAAGGATGACATTGACAAATAGCTGTAAAGAACAAATTGCTAGGGACGGCGCCAGAGTATTTGTCGAATTGCTGTCTAATCCAGAAGGAATGGGACCAAGTTTGCAAGCATTATATAACTTGTCTGGATTGGATGACAATGCAGCCATCCTTGTTGAGTCTTCAGTCCTTCCATCTCTTCTGGAAATTCTTTTCAATGAGCAGGATCCTTCATATGAGTTTAAGTCATTAGCTGCTTCAACAATTGCAAATATAGTCTCAAAGCCAGGGCATTGGGAGCTAGCATCTGCTGACAAGAAGGGAAATCCAATGCAGTCTGAAAATATTGTTTTCGGACTTTTGGGGATCTTAAACTATGTGTCCTCTGAATGTCAAGTGACCATTCTTCGCATTCTTTGCGGGATTACTTCATCTCCTCAAGCATCAGAGTCGGTAGCCATGCAAATCATGTCTGGTGGTAGCTTTAGAATGGTCGCGCCATTTCTTCAACACTCGGAAATCGAACACAGACTCTTGGCTTTTAAGCTTACCAGACAACTATCCGAATGGTGTAGTCAAGATCTAACAAACGAGCTAAGGCTTTCAAACACACTTACCATTCTTGAAGATAAACTATTAGATAACCAATCAACAAACGATGAGAGATCAGAAGCAGCACAGATACTAGCCAACCTTTCGCTCTCAGAAGCTGAAGTGAAGACACTTTTAGGAGACAACTTTGTGGAATGGAGTGTAGCTACTCTGAAAAACCAGAGGCGTGTTACAAATGCAAGATTTTCACACTCTGGCATGCAGGAAGGCCTTCTTGGACTCTTGCTTCACTATTCTAAAAACCTTGATCAACAAACTCTTAATGTAATCACAGGAAATCGCCTCATGTCAGTTTTCTGCGAGCAGCTGGACTATACCTCGAAACCAAAGGTAAAACGCCTTGCTGCTATTGGCTTAAAAAACTTGTCAGAGCTCGGAAGCTTGCGCAATACGGATAGAGAGTTTGGAGTTGGACAATCATCTTCTAGCAGCTTATTCTGTTCTTACCTTGTCTTCATGTGTGGGAAAGCTTCTAATCAACCTTCCACATGTCCCATTCACAACATCCCTTGCGACGACTCCACTCAACTGTGCCTCCACAAGACCAATTCTATCAAGCCATTGGTTGATCTCCTAAGTGACAACGACACAAGTGTTCAGGTCGCCGCTGTGGATGCACTATCTACTCTCCTTTTAGATTACCATTCGCGTAGTTTCAAAAGAACTGTTGATGAGCTTGAGCATCTAGGCGTGGTTGATTCAGTGATCACTCTTTTCACGGAGGTTCGATCTGGGGAGCTTCAGGAGAAGACAATTTGGATAATAGAGAAGATACTGAGAGTGGAGAATCATAGCCAAAGATATGCACTCAATCAGCCTCTTGTGAGAGGCTTGGTTGAAGCATTCAAGCATGGGAATAGCAACACAAGGAAGCATGCTCAAGATGCTCTAACACTCCTTAAGCAGTTATCAGGTATTAGTGGTAAGGAATCAAGTCAATCTAGATCTAGGAGATAG 3123 0.4582 MTSPAPALHSIRASLSDLCAPPPDPRRPFHNPRCFSAFARRLQLVLDQLLLLLPPTPPLPVQTALKGIAGDLSKAAETVSLYENASKIFVLLNCKTLCSSLQEQTAAISGWLALLDSGVEEFPELQKKVFDLSRDMKLAQFRVTENEERVLCALEKEGQGRDTSKAVQSAIMMDLARAFGVDPDDHAELLTQVNLFKDDALRSKSVLETRILASLERILKNWSVEPAIVTRNMDFDIEDDDDANAPIMPFKNFLCPLTKEVMTDPVVVLESSQTYERTAVEYWFSRCIENGIDPICPVTGTVLKSLELKPNIGLAGAIEEWIGRVVEYHVKSAAQHLIEEPLSIDHVERALDNIYKVSEEHPTSRYVIRNAGIVVLIVTVLSKNSKTIGSRLRSKVLMTLLSMAKDEESRKIMLERGITRLAIHSLIGNSEKEREYAVKLLSEFCNEDDCCVRIALEKGALVLLSSMAGNLEYPSLSNLAEEVLKKMERVEANVQCLAAAGRFEPLLSRLRDGSDGVKIEMASLVGRMTLTNSCKEQIARDGARVFVELLSNPEGMGPSLQALYNLSGLDDNAAILVESSVLPSLLEILFNEQDPSYEFKSLAASTIANIVSKPGHWELASADKKGNPMQSENIVFGLLGILNYVSSECQVTILRILCGITSSPQASESVAMQIMSGGSFRMVAPFLQHSEIEHRLLAFKLTRQLSEWCSQDLTNELRLSNTLTILEDKLLDNQSTNDERSEAAQILANLSLSEAEVKTLLGDNFVEWSVATLKNQRRVTNARFSHSGMQEGLLGLLLHYSKNLDQQTLNVITGNRLMSVFCEQLDYTSKPKVKRLAAIGLKNLSELGSLRNTDREFGVGQSSSSSLFCSYLVFMCGKASNQPSTCPIHNIPCDDSTQLCLHKTNSIKPLVDLLSDNDTSVQVAAVDALSTLLLDYHSRSFKRTVDELEHLGVVDSVITLFTEVRSGELQEKTIWIIEKILRVENHSQRYALNQPLVRGLVEAFKHGNSNTRKHAQDALTLLKQLSGISGKESSQSRSRR 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00390 1040 Pfam U-box domain 252 322 IPR003613 GO:0004842|GO:0016567
Aip01g00390 1040 SMART Ubox_2 252 321 IPR003613 GO:0004842|GO:0016567
Aip01g00390 1040 Coils Coil 480 500 - -
Aip01g00390 1040 SUPERFAMILY RING/U-box 249 322 - -
Aip01g00390 1040 SMART arm_5 894 934 IPR000225 GO:0005515
Aip01g00390 1040 SMART arm_5 805 846 IPR000225 GO:0005515
Aip01g00390 1040 SMART arm_5 361 405 IPR000225 GO:0005515
Aip01g00390 1040 SMART arm_5 710 752 IPR000225 GO:0005515
Aip01g00390 1040 SMART arm_5 569 612 IPR000225 GO:0005515
Aip01g00390 1040 SMART arm_5 406 446 IPR000225 GO:0005515
Aip01g00390 1040 SMART arm_5 531 568 IPR000225 GO:0005515
Aip01g00390 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 324 IPR013083 -
Aip01g00390 1040 Gene3D - 886 1026 IPR011989 -
Aip01g00390 1040 Gene3D - 333 849 IPR011989 -
Aip01g00390 1040 ProSiteProfiles U-box domain profile. 248 328 IPR003613 GO:0004842|GO:0016567
Aip01g00390 1040 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1035 - -
Aip01g00390 1040 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1035 - -
Aip01g00390 1040 SUPERFAMILY ARM repeat 371 985 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00390 Aip-Chr1 4756098 4761744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00390 250 1029 U-box Gene Family AT1G20780 27.353 9.82e-72 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00390 - - ccaj:109816409 1451.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00390 01 4756098 4761744 Aip01g00390 01 4756098 4761744 ECH