Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00380 ATGGCATTGGAGAATCTTCCTTTGATCATAAAGCTTAACATTTCTTCCAAACGAAAGCTTGGCGTAAATGAAAGCGTCGAGGTCAGGAGCATGGAGGAAGGCTTTCAGGGATCATGGCACCCGGGGAAAGTTGTCCATTCTGGGAAACTGCAGCGCCATGTCAAATATGATAACGTATTACTTGATGATGAGGTGAATTACCTTGTGGATAAGGTGACTGTTCCGAAGGTATTGGATGGCGATAGCGACTCTTCAAATTGCAACATTCGTGGTTGGATTAGGCCGGTGCCTCCTAAGAGGGAATTTGAAAGTAGGGAACTTAAATTTGGTCTGTGTGTTGATGTGTACCATGAAGAAGCTTGGTGGGATGGGGTTATATTTGATCACTGTGATGAAAAGCCAGAGAGGAGTGTATATTTTCCGGATTTGGGTGATGAGATGAAGATTGGAGTTCATCAAATGCGGATAACTTATGATTGGAATGAGGTTACTGGGGAGTGGCAGTCGAGAGGGAACTGGGTTTTTCTTGAAGTTCTTGAGGAGTATGAGAGGAAGATGTTTATTTCAGTTTCAGTGAAGCAAGTTTGGTATGATGTAAGGACCAAAAAGGACTTCGCCAAGATTGGCGAATGGACTTTTAATGAGAAAGAGTTATGGAAAAAAATGGTAATGGAGGTAGTTGATGATTACTTAAGGCTTACACTAGGAGAAGTTTGCTCCTCCTTAGATCTTCCAAGGAGTTTATTGAGAGAAACACTGGAGATGGAGTCGGTTGAATCTACGGCTAATGTTGACTTCAATCAGGAAGTTGATATGGCCAACTCTTTGGATGTTGCGAACTCTGCTGGCCAGTCGAGTAGCATTTGTATCACAGCTGCTCATTGTGATGGTACCTCTGATAATGCATTTGGTTCTGATGATGGGATTGCTGAACTCCCTATGGAAGAAGGTGAGTCATCGAATTTGTTGAACGCTGTGCAAAAGTGGCCTACCATTCAGGATCAAGGGGTCAAAACTGTCCATCAGAAAGAAGTTTCAGTGCAGAAAGAACCCGTTACTCCTGTTGAAGAGGTCTCAACTCAGTTTCACAAAGAAATATCCTGCGTTGGTGCTACTGAAGTAATAGTTAATGGAAGAAAACATAGAAAGCTTCGCAGCTCAACTCAACATTGGGAACCTCTCAGATTGTCTGACGTTGAGTTATGTCCTGATTCTATTGAAGAATATGCACAGGCAGGTAAAAGAGCTTGCCCTGAAAAAGCACGAAAACAACTTGCGTATCTTGGATGGGAAATTGAGTGGACAAAGCGTAAAGCAAGCGACACTTGCTATAGGTACCGATATAGGTCGCCTGATAAACAGGGTGTTTACTACTCTCTCAGTCAAGTTTGTAAGTATGTGGCACAGAACTCGGACATGAACCCTTTGCCGTCCCAAAATGATCAGAGTATGATGCAACTTACAGCTGACAATCATCTTGAACCTATTCTTATTGATGAATCAGAAAAGAGTCAGGATCGAAATGATCAGAGTGCGATGCAACTTACAGATGACAATCATCTTGCACCTATTCTTATTGATCAATCAGAAAAGAGCCATGATCTAAATATTTTGCCACCAGTTGTGTCGTCTCCTGTGGATGAAGTTGCAGATGAACCTGAGTTTTGTCCTCAAGCTGTTTTAGAATATCTCTTCAATAGATCTGCAATGCGAGGGCCTGACATGAAAGTGGGTAGGTCCAAAGCAAAGAGGCATCTATTGGCTGAAGGATGGAGCTATCACTATGCAAACCCAAGAAATAAAAGACAAGGGTTTGTGTATATCCCTCCAGACAAGGGAAGAAGTCTCCCAACACTCCATGCAGCTTGCCATTATTGTATTAAACAAAATGTTTCTAAATGGACCGACCTCGGAATGCAACCTTTGAATGGACAGGATAATGTTGACCAGGTTTGGAGTGCAAATTTATTGCAGAAAGCGTCCCAATGGCTTCGAGAGGAAGGCATGGTACCTCCCACAGAAGTCATAACTTCAAGTGGATCAAACCATAGTCGGAAGCGGAAACTCTTGAACAATACAAAGCCCAGCTTATCTAAGCCCCAAAGAAATGGATTACCTCGACGCGTGCTGCGATCAAATAAAAGGGTGCAAAAGGTGTCTACCCCTTCTTTGTCACACCAGAAACCTCAGAATGTACTCTCTTGGTTGATAGACAACAACATTCTGTTGCCAAGGTCTAAGGTTTCTTACAAGCCAAAAGGCAGGCTCTGTTTAGCTGAAGGGAGAATAACCAGTGATGGAATCAAGTGTAATTGTTGTTTGAAAGTATATAGTCTTGCTGGCTTTGAAAGTCATGCTAGTGGCTGTAGTACACGCAGACCGGCTGCAAGTATTATTTTAGAAGATGGTAGATCACTGTTAGATTGCCTGATAAAAACAGTGGAAGATCATATGACAAGGGAAGCTATGGCAGAACCACCAAAATATTTTCGTAAAGGCGAGAATGACAATATTTGTTCTGTTTGCCACTATGGTGGGAATCTAATTTTATGCGATCAATGTCCATCTTCATTTCATGGGAAATGTCTAGGTCTGAAGAACATTCCTGATGGTGACTGGTTTTGCCCATCATGTCGATGTGCAATTTGTGACAAACGTAACATAAAAGAAAAGGAGGAAGATTTCCTTGTTTGCATTCAGTGTGAACATAAATATCACTTTGAGTGCCTCAGAAGTAAATATGCAACTAACTCGAGAAGATATAGTAAAAACTGGTTCTGTGGGAAGGACTGTGAAAAGATATATTTTGGTCTCCATAAGCTACTAGGAGAGCCAGTTTCAGTGGGCATTAACAATCTAACTTGGACGTTGGTGAAATATATAAACTCCGAGAGTAGTGATCCGTGTACTACTCAAGGTTACTTATTGCCAGAAAGTTACAGCAAACTCAATGTTGCACTCTCAGTGATGCATGAATGTTTTGAGCCCCTAAAGGAACCTTCGTCTACCAGAGATCTCACGGAAGATGTTTTATTCAGTCAATGGTCAACACTTAATCGATTGAATTTCCATGGTTTCTATACCGTACTTCTGGAGAGAAATGAAGAACTGATAAGTGCAGCAACTCTTAGGGTTTATGGAAAGAAGGTAGCAGAATTGCCTCTTATTGGTACCAGATTACAGTATCGGCGACATGGAATGTGCCGCATTTTGATGAATGAGCTTGAAAAGAGGCTCATGCAGTTGGGAGTGGAGCGGCTCGTTTTGCCTGCTGTTCCTAGTGTTGTAGACACATGGACTGGTTCTTTTGGCTTTGTAAAGATGACAGAGTTCGAGAGGTCGCAATTCTTGGACAATACTTTTTTAGATTTTCAGGGTACCATCATGTGCCAGAAGCTGCTGAAGATTCCATCTTCAGAACCGGTTTTGTTAATAGAGTCCCAACAAAGGACACAGCATGTTTTGCCTGGAAACAAGTTAAATTTTGACGCCGATCTGATATCTGAAGTATTACACCAAGCAGAAGAAACTGACAAAGGAGAGAGAGAGAATTCACAAATCCACAATAATTGTGCTGGAAGCAATGATCATTGCAGTAATGGTGCCATTGACATTGAGCAAGTCACACCGGTGAATAAACCAAGTCTTGAGGATCAACAGTGGCAGAATGATCCACAGAGCTCTATTGTAACACAAGCTGACAGTAATAATGGCTCACCATATAAGTGCTACTACAAAAGAAGGAAATACACAAAGTTTTAG 3762 0.4179 MALENLPLIIKLNISSKRKLGVNESVEVRSMEEGFQGSWHPGKVVHSGKLQRHVKYDNVLLDDEVNYLVDKVTVPKVLDGDSDSSNCNIRGWIRPVPPKREFESRELKFGLCVDVYHEEAWWDGVIFDHCDEKPERSVYFPDLGDEMKIGVHQMRITYDWNEVTGEWQSRGNWVFLEVLEEYERKMFISVSVKQVWYDVRTKKDFAKIGEWTFNEKELWKKMVMEVVDDYLRLTLGEVCSSLDLPRSLLRETLEMESVESTANVDFNQEVDMANSLDVANSAGQSSSICITAAHCDGTSDNAFGSDDGIAELPMEEGESSNLLNAVQKWPTIQDQGVKTVHQKEVSVQKEPVTPVEEVSTQFHKEISCVGATEVIVNGRKHRKLRSSTQHWEPLRLSDVELCPDSIEEYAQAGKRACPEKARKQLAYLGWEIEWTKRKASDTCYRYRYRSPDKQGVYYSLSQVCKYVAQNSDMNPLPSQNDQSMMQLTADNHLEPILIDESEKSQDRNDQSAMQLTDDNHLAPILIDQSEKSHDLNILPPVVSSPVDEVADEPEFCPQAVLEYLFNRSAMRGPDMKVGRSKAKRHLLAEGWSYHYANPRNKRQGFVYIPPDKGRSLPTLHAACHYCIKQNVSKWTDLGMQPLNGQDNVDQVWSANLLQKASQWLREEGMVPPTEVITSSGSNHSRKRKLLNNTKPSLSKPQRNGLPRRVLRSNKRVQKVSTPSLSHQKPQNVLSWLIDNNILLPRSKVSYKPKGRLCLAEGRITSDGIKCNCCLKVYSLAGFESHASGCSTRRPAASIILEDGRSLLDCLIKTVEDHMTREAMAEPPKYFRKGENDNICSVCHYGGNLILCDQCPSSFHGKCLGLKNIPDGDWFCPSCRCAICDKRNIKEKEEDFLVCIQCEHKYHFECLRSKYATNSRRYSKNWFCGKDCEKIYFGLHKLLGEPVSVGINNLTWTLVKYINSESSDPCTTQGYLLPESYSKLNVALSVMHECFEPLKEPSSTRDLTEDVLFSQWSTLNRLNFHGFYTVLLERNEELISAATLRVYGKKVAELPLIGTRLQYRRHGMCRILMNELEKRLMQLGVERLVLPAVPSVVDTWTGSFGFVKMTEFERSQFLDNTFLDFQGTIMCQKLLKIPSSEPVLLIESQQRTQHVLPGNKLNFDADLISEVLHQAEETDKGERENSQIHNNCAGSNDHCSNGAIDIEQVTPVNKPSLEDQQWQNDPQSSIVTQADSNNGSPYKCYYKRRKYTKF 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00380 1253 SMART ring_2 880 930 IPR001841 -
Aip01g00380 1253 SMART ring_2 839 878 IPR001841 -
Aip01g00380 1253 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 516 1171 - -
Aip01g00380 1253 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 983 1111 IPR016181 -
Aip01g00380 1253 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 14 508 - -
Aip01g00380 1253 MobiDBLite consensus disorder prediction 672 706 - -
Aip01g00380 1253 Pfam Acetyltransferase (GNAT) family 1008 1092 IPR000182 GO:0016407
Aip01g00380 1253 PANTHER PHD ZINC FINGER PROTEIN 516 1171 - -
Aip01g00380 1253 PANTHER PHD ZINC FINGER PROTEIN 14 508 - -
Aip01g00380 1253 Pfam Agenet domain 24 98 IPR008395 -
Aip01g00380 1253 Pfam PHD-finger 838 880 IPR019787 -
Aip01g00380 1253 ProSiteProfiles Zinc finger PHD-type profile. 836 881 IPR019787 -
Aip01g00380 1253 CDD NAT_SF 1029 1089 - -
Aip01g00380 1253 MobiDBLite consensus disorder prediction 1215 1235 - -
Aip01g00380 1253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 881 934 IPR013083 -
Aip01g00380 1253 SUPERFAMILY FYVE/PHD zinc finger 814 879 IPR011011 -
Aip01g00380 1253 Pfam Tify domain binding domain 761 811 IPR032308 -
Aip01g00380 1253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 830 880 IPR013083 -
Aip01g00380 1253 SMART PHD_3 880 931 IPR001965 -
Aip01g00380 1253 SMART PHD_3 838 879 IPR001965 -
Aip01g00380 1253 CDD PHD2_CHD_II 839 878 - -
Aip01g00380 1253 Gene3D - 987 1122 - -
Aip01g00380 1253 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 989 1134 IPR000182 GO:0016407
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00380 Aip-Chr1 4518348 4529419 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00380 29 469 PHD Transcription Factor Family AT5G58610 30.631 7.16e-59 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip01g00380 Acetyltransf_1 0.00016 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00380 - - aip:107644722 2541.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00380 01 4518348 4529419 Aip01g00380 01 4518348 4529419 ECH