Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00340 ATGGGGGGTTCCTCACCTTGTGCTTCTTGCAAATTGTTGAGGCGGCGTTGCACCAAAGAATGCATCTTTGCTCCTTATTTTCCTTCTGATGATCCTCGCAAGTTTGCCATTGTGCACAAAGTCTTTGGCGCTAGCAATGTCAGCAAAATGCTTCAGGAACTTCCAATTGATCAAAGAGGAGATGCTGTAAGCAGTTTAGTTTATGAGGCAACTGCAAGGGTGAGAGACCCTGTGTATGGTTGTGTTGGAGCAATATCATACCTTCAAAATCAAGTTACACAATTGCAAATGCAACTTGCAGTGGCTCAGGCAGAGATTCTAAGCATCCATCAGATGCAACAAGACCCTTCTAATAACAATACTACCTTATTACCAAGTCAATTATTAGATCAAGATTATAGTGAAAAGTTTCTGCTCCTATCATCAGCTGAAAACAATAACAACTATGACTTTCTTCCCCAATATCTTAGCTTCGCTTCTTCTTCTTCTTCTTCTTCAAATGTATTCCAAGACTCTGAGCCTCTTAAGAGAGATAACTGCATGCTTGTTTATGTTTATCATGTTAGAGAGACACGTATAGGGAGATGGGGCCCGAAAAGAAAGACAAAAGAGAAAATTTTTAACAAGGGAGAAATTTTGGTTTATATATATCATAATTTTGGTCTATATAATTTTTAG 678 0.385 MGGSSPCASCKLLRRRCTKECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELPIDQRGDAVSSLVYEATARVRDPVYGCVGAISYLQNQVTQLQMQLAVAQAEILSIHQMQQDPSNNNTTLLPSQLLDQDYSEKFLLLSSAENNNNYDFLPQYLSFASSSSSSSNVFQDSEPLKRDNCMLVYVYHVRETRIGRWGPKRKTKEKIFNKGEILVYIYHNFGLYNF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00340 225 Coils Coil 85 105 - -
Aip01g00340 225 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Aip01g00340 225 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 179 - -
Aip01g00340 225 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Aip01g00340 225 PANTHER LATERAL ORGAN BOUNDARIES (LOB) DOMAIN PROTEIN 2 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00340 Aip-Chr1 3653907 3654951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00340 3 140 AS2 family AT2G30130 76.812 4.39e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip01g00340 LOB 1.4e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00340 01 3653907 3654951 Aip01g00340 01 3653907 3654951 ECH