LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip01g00288	ATGGCTTCCTTTTCTTATTTGCAATGTTTGCTTGTGATTGTTACGGTGACAATGATGATTCCGACTACAACAAATGCAGCAGCACTCACTCCTAATTTCTATAAGAAAGTTTGTCCAAAAGCATTGCCAGTGATAAGGAGAGTGGTTCAAAAGGCAATAAATCGTGAAAGGCGCATGGGAGCTTCTTTGCTGCGTTTGCATTTCCATGATTGCTTTGTTAATGGATGTGATGGATCGATTCTGCTAGATGACACGAAGAACTTCACCGGAGAGAAGACAGCAAAACCAAACCTTAACTCAATCAGAGGTTTGGAAGTGGTTGATGAGATTAAGGCTGCTGTTGATAAAGCTTGCAAACGACCTGTCGTTTCATGTGCCGATATCTTAGCTGTTGCTGCTCGTGACTCTGTTGCCATTTTGGGTGGTCCACAATTTTGGTACAAAGTACTATTAGGAAGAAGAGACGCAAGAACCGCAAGCATAACCGCCGCAAATAACAACCTACCAGCACCATTCTTAAACTTCACACAATTGGTTACAAGCTTCAACAACGTTGGACTAAACACCAAGGACCTAGTTGTACTTTCAGGTGGCCACACAATTGGGTTTGCAAGGTGCACAACGTACAGGAATAGAATCTACAACGACACAAACATTGAAACTAATTTTGCAACATCTCTAAGGAGGAATTGTCCTAGGACTAGTGGTGTTGGGGACAACAATTTGACACCGTTGGATCCAACTCCATCAAGTGTTGATAATTTGTACTACAAAGCGTTGTTGGGCAAAAAGGGAATTTTACATTCGGATCAGGAGTTATATAAGGGGAATGGTAGTGAGAGTGATAAGTTGGTGGAGCTTTATAGCAAGAACCCTTTTGCGTTTGCTAGAGACTTCAAAAATTCAATGATCAAAATGGGTAATATGAAGTCTCTTACTGGAAACAATGGTGAGATTAGGCTCGATTGCAGAAGGGTTAATTAA	984	0.4126	MASFSYLQCLLVIVTVTMMIPTTTNAAALTPNFYKKVCPKALPVIRRVVQKAINRERRMGASLLRLHFHDCFVNGCDGSILLDDTKNFTGEKTAKPNLNSIRGLEVVDEIKAAVDKACKRPVVSCADILAVAARDSVAILGGPQFWYKVLLGRRDARTASITAANNNLPAPFLNFTQLVTSFNNVGLNTKDLVVLSGGHTIGFARCTTYRNRIYNDTNIETNFATSLRRNCPRTSGVGDNNLTPLDPTPSSVDNLYYKALLGKKGILHSDQELYKGNGSESDKLVELYSKNPFAFARDFKNSMIKMGNMKSLTGNNGEIRLDCRRVN	327

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip01g00288	327	PRINTS	Haem peroxidase superfamily signature	60	74	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Aip01g00288	327	PRINTS	Haem peroxidase superfamily signature	245	260	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Aip01g00288	327	PRINTS	Haem peroxidase superfamily signature	191	206	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Aip01g00288	327	PRINTS	Haem peroxidase superfamily signature	123	140	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Aip01g00288	327	CDD	secretory_peroxidase	29	326	IPR033905	GO:0004601\|GO:0042744
Aip01g00288	327	PANTHER	PEROXIDASE 72-RELATED	7	326	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aip01g00288	327	ProSitePatterns	Peroxidases active site signature.	60	71	IPR019794	GO:0004601
Aip01g00288	327	PRINTS	Plant peroxidase signature	259	276	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aip01g00288	327	PRINTS	Plant peroxidase signature	62	82	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aip01g00288	327	PRINTS	Plant peroxidase signature	102	115	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aip01g00288	327	PRINTS	Plant peroxidase signature	190	202	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aip01g00288	327	PRINTS	Plant peroxidase signature	243	258	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aip01g00288	327	PRINTS	Plant peroxidase signature	122	132	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aip01g00288	327	PRINTS	Plant peroxidase signature	38	57	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aip01g00288	327	PRINTS	Plant peroxidase signature	301	314	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
Aip01g00288	327	ProSiteProfiles	Plant heme peroxidase family profile.	28	327	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
Aip01g00288	327	SUPERFAMILY	Heme-dependent peroxidases	29	327	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
Aip01g00288	327	Gene3D	-	32	324	-	-
Aip01g00288	327	ProSitePatterns	Peroxidases proximal heme-ligand signature.	191	201	IPR019793	-
Aip01g00288	327	PANTHER	CATIONIC PEROXIDASE	7	326	-	-
Aip01g00288	327	Gene3D	Peroxidase, domain 2	169	306	-	-
Aip01g00288	327	Pfam	Peroxidase	46	290	IPR002016	GO:0004601\|GO:0006979\|GO:0020037

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip01g00288	Aip-Chr1	3085300	3088081	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip01g00288	27	327	Peroxidase	AT5G05340	59.603	3.03e-126	362

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip01g00288	K00430		-	gmx:100816056	490.345

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip01g00288	01	3085300	3088081	Aip01g00288	01	3085300	3088081	ECH