Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00277 ATGCCGGAAATTGAAGACCACTCGCCACCGTCTCCGACGGAGCAAAGGGCTCTATTCGGGAAATACGACCTTGGAAGGCTCTTAGGATGCGGCGCGTTCGCGAAGGTTTACCACGCGCGGAACCTTGAGACTGGAGAAAGCGTGGCGGTGAAGATCATAAACAAGAAGAAGTTACAGGGAACCGGTTTAGCCGGTAACGTGAAGCGAGAGATAAACATAATGAGTAGGTTGCACCACCCTCACATCGTGAAGCTCCGCGAGGTTCTTGCGACGAAGACGAAGATCTTCTTCGTAATGGAGTTTATTAAAGGTGGTGAATTGTTTGCGAGGGTTTCTAAGGGGAGATTCTCGGAAGATCTGAGCCGTCAGTATTTTCATCAGCTGATCTCGGCCGTTGGATATTGCCACTCGCGTGGGGTGTTTCATAGGGATCTTAAACCGGAGAATCTCTTGCTTGATGAACATGGCAATTTGAAGGTTTCGGATTTTGGATTGAGTGCAGTTAGGGATCAGATACACCCTGATGGACTATTACACACGCTGTGTGGGACCCCTGCCTACGTGGCACCTGAGATTCTATCGAAACGCGGCTACGACGGTGCCAAAGTTGACGTATGGTCATGCGGCGTCGTTTTGTTCGTTCTAACGGCAGGGTACTTGCCGTTTAATGACCCGAACTTAATGGTTATGTATAGAAAGATCTACAAAGGAGAGTTTCGGTGTCCACGTTGGATGTCACCGGATCTCAAAAGATTCCTCCGGAAGCTTCTAGATGTTAACCCAGAGACAAGAATAACTGTCGAAGAAATGAAAAAGGATCCGTGGTTTAGAAAGGGCTACAAAGAGATTAAGCCTTATGAGGATGATTATGGGCTTGGGCTTGGGGTTGGGCCCAATAAGGTCTTGAATGCGTTTGATATAGTAACTTTTTCTTCCGGTTTGGATTTGTCAGGGCTGTTTGGTGATATTGGTAGTGGGAAGGGAGAGTGGTTGGTGGTTAGGGGGTTACCGGAGGAGGTGGTGGAGGTGGCGGAGGAGGTTGGGGTGGCGCAAGGGATGGCGGTGAGGTGGAAGAAGGAGGGTGGGGTTGACTTGGGAAGGATGAAAGGGGAATTGGAGATTGGGGTGGAAGCTTACCGGCTACCGGCCGAGATGGTTTTGGTTGAGGTTAGAAAGAAGTTTGGGGATGACGTGGCTTTTAGGGAACTTTGGGAGAATAAACTCAAGCCTAGGTTTCTCTTGTTAAAATGTGGTTCCGATGTTGCGACCACCTCGTCGCAACATAACGAGGAACCAGAGTCTCCGGTTCTAAACGAACAAAGCAGAAACAATAAACCAGAAGTGATTTATGATCAATGTTGA 1362 0.4868 MPEIEDHSPPSPTEQRALFGKYDLGRLLGCGAFAKVYHARNLETGESVAVKIINKKKLQGTGLAGNVKREINIMSRLHHPHIVKLREVLATKTKIFFVMEFIKGGELFARVSKGRFSEDLSRQYFHQLISAVGYCHSRGVFHRDLKPENLLLDEHGNLKVSDFGLSAVRDQIHPDGLLHTLCGTPAYVAPEILSKRGYDGAKVDVWSCGVVLFVLTAGYLPFNDPNLMVMYRKIYKGEFRCPRWMSPDLKRFLRKLLDVNPETRITVEEMKKDPWFRKGYKEIKPYEDDYGLGLGVGPNKVLNAFDIVTFSSGLDLSGLFGDIGSGKGEWLVVRGLPEEVVEVAEEVGVAQGMAVRWKKEGGVDLGRMKGELEIGVEAYRLPAEMVLVEVRKKFGDDVAFRELWENKLKPRFLLLKCGSDVATTSSQHNEEPESPVLNEQSRNNKPEVIYDQC 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00277 453 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165
Aip01g00277 453 CDD CIPK_C 303 410 - -
Aip01g00277 453 Gene3D Kinase associated domain 1, KA1 298 415 - -
Aip01g00277 453 MobiDBLite consensus disorder prediction 423 445 - -
Aip01g00277 453 Pfam NAF domain 301 356 IPR004041 GO:0007165
Aip01g00277 453 SUPERFAMILY Protein kinase-like (PK-like) 19 284 IPR011009 -
Aip01g00277 453 Gene3D Transferase(Phosphotransferase) domain 1 12 291 - -
Aip01g00277 453 SMART serkin_6 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00277 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Aip01g00277 453 Pfam Protein kinase domain 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00277 453 PANTHER - 1 436 - -
Aip01g00277 453 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 436 - -
Aip01g00277 453 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Aip01g00277 453 ProSiteProfiles Protein kinase domain profile. 22 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00277 Aip-Chr1 2958281 2960661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00277 1 426 CBL-interacting serine-threonine protein kinases AT2G30360 60.780 0.0 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Aip01g00277 Pkinase 4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00277 - K12761 gsj:114377188 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00277 01 2958281 2960661 Aip01g00277 01 2958281 2960661 ECH
Aip01g00277 01 2958281 2960661 Aip07g01265 07 20148945 20152022 PCT