Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00273 ATGGAGGATCATCGTTACATGGAAACTGATCCAACTGGTAGATATGGAAGGGTTGGAGAAATTCTTGGAAAAGGGGCAATGAAGACAGTGTACAAAGCAATTGATGCAGTGCTCGGAATAGAGGTGGCATGGAACCAAGTCAGACTCAACGAGGCGCTTCGCTCGCCGGACGACTTGGAGAGGCTCTACTTAGAGGTTCATCTCCTCAGTACCCTCAACCACGAATCGATCATGCGATTCTATACCTCTTGGATCGATGTTGATAACAAGTCCTTCAACTTCATCACAGAGATGTTCACTTCAGGAACACTCAGAGAATACCGGAAGAAATATAAGCAAGTTGGGATTCAAGCAATAAAGAGTTGGAGTCGCCAAATTTTGCAAGGTCTTGTTTATCTACACGAGCACGATCCTCCGGTAATCCACAGAGACCTCAAATGTGATAACATATTTGTGAATGGCCATCTTGGACAAGTGAAAATCGGCGACTTAGGACTAGCGGCCATCCTCCGTGGCTCGCAGCTGGCTCACAGCGTTATAGGCACCCCTGAATTCATGGCACCGGAGTTGTACGAAGAAGAATACAACGAACTCGTCGACGTGTACTCTTTCGGCATGTGTGTTCTGGAGATGCTTACTTCTGAATATCCGTACAGCGAATGCGCAAACCCTGCGCAAATTTACAAGAAAGTGACTTCGGGGAAGTTGCCGGCTTCATTTTCCCGGTTAGAAAACAAGGAAGCGCAGAGATTTATAGGCAAGTGCCTTGTATCTGCACCAGAGAGACCTTCTGCAAAGGAATTATTGCATGATCCGTTTCTTGTGTCTGACGATACATTATCAATGGCGAAAATTGGAATTCAGAAGCCATTTCTAAATTACAATGAGATGGAGAAGCTTCAATTGCGCGACGATGTTGCTCGAACAGAGATGTCGATTACCGGGAAACTGAACCCGGAAGATGATACTATCTTTCTCAAAGTGCAAATTACCGATAAGGATGAGTCCAGTAGGAATATATTCTTTCCGTTCGACATTGTGACGGACACGCCGATTGATGTGGCGGTGGAGATGGTGAGAGAATTGGAGATCTCGGATTGGGAGCCTTCGGAAATTGCATATATAATCGAAGCAGAGATTTCCGAACTGATGCCGAATGTGAGGAGAAGTAACTGTTCAGATACTTGCCATACGTTCGACGATGACTACGACCGGCCTCGCCGGCTTTTCTGCTCCGGCTCTTCTTGTTCCTCCTCCCAAGAATCCATTTCCAAAGCTGATGAAATACCAAATCATGGATATTACTGGCTCCATGATGATATGCACGACGATGCGAGTTCGCGATGCTCGTCGCAAGGGACATATTCCAACTTGAATTTTTGTTCAATGGATGATCATGAATACAATGTGGCTTCTTCTGCAAGAAAAGATAAACATAATCACATCATAAAGAGTCACCACAAGTGTACAAGGTTTTCCCCTCTTGAAGAACCAATCACTCTCAACCGGGGCAAAGTTTTCGCCGGCGCGGCGAGTAAAGGTAAGAGAACAGTGGACACTCCTAAACTGATGAGGAACAATTCGCTGATTGACATGAGGAGTCAGATGCTGCACCGGCAGCTCGTTGAGGAGGTTAACAAAAGACGGTTATTCAAAACGGTTGATGCCATTGAAAAGATTGGATTTCAAAACCCTTCTGAGATATCCAGGAAAAAATCACAGCCATAA 1728 0.4531 MEDHRYMETDPTGRYGRVGEILGKGAMKTVYKAIDAVLGIEVAWNQVRLNEALRSPDDLERLYLEVHLLSTLNHESIMRFYTSWIDVDNKSFNFITEMFTSGTLREYRKKYKQVGIQAIKSWSRQILQGLVYLHEHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQLAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSEYPYSECANPAQIYKKVTSGKLPASFSRLENKEAQRFIGKCLVSAPERPSAKELLHDPFLVSDDTLSMAKIGIQKPFLNYNEMEKLQLRDDVARTEMSITGKLNPEDDTIFLKVQITDKDESSRNIFFPFDIVTDTPIDVAVEMVRELEISDWEPSEIAYIIEAEISELMPNVRRSNCSDTCHTFDDDYDRPRRLFCSGSSCSSSQESISKADEIPNHGYYWLHDDMHDDASSRCSSQGTYSNLNFCSMDDHEYNVASSARKDKHNHIIKSHHKCTRFSPLEEPITLNRGKVFAGAASKGKRTVDTPKLMRNNSLIDMRSQMLHRQLVEEVNKRRLFKTVDAIEKIGFQNPSEISRKKSQP 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00273 575 CDD STKc_WNK 14 274 - -
Aip01g00273 575 ProSiteProfiles Protein kinase domain profile. 16 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00273 575 SUPERFAMILY Protein kinase-like (PK-like) 17 301 IPR011009 -
Aip01g00273 575 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 575 - -
Aip01g00273 575 PANTHER WNK KINASE 12 575 - -
Aip01g00273 575 Pfam Protein kinase domain 19 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00273 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Aip01g00273 575 Gene3D Phosphorylase Kinase; domain 1 1 97 - -
Aip01g00273 575 Gene3D Transferase(Phosphotransferase) domain 1 99 282 - -
Aip01g00273 575 SMART serkin_6 16 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00273 Aip-Chr1 2926998 2931455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00273 6 571 MAP Kinase Kinase Kinase AT5G58350 59.790 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Aip01g00273 Pkinase 5.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00273 K08867 - gmx:100778102 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00273 01 2926998 2931455 Aip01g00273 01 2926998 2931455 ECH
Aip01g00273 01 2926998 2931455 Aip07g01255 07 19798384 19801657 PCT