Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00270 ATGCCACAACAAGAGTTTTCAATGGCTCTAATGATTCTTCTCATTGTTCTCTCCATTGACATGATTATCATGCAAGGTGCCACAGCTGACTATGGTGGTTGGGAGAGTGCTCATGCCACTTTCTATGGTGGTGGTGATGCCTCTGGCACAATGGGAGGTGCTTGTGGATATGGGAATTTGTATAGCCAAGGTTATGGAACAAACACAGCAGCATTAAGCACTGCTTTGTTCAACAATGGACTAAGCTGTGGATCATGCTATGAGATGAAGTGTAATGATGACCCAAGATGGTGCAAGCCGGCTTCCATCATCGTCACGGCCACCAACTTCTGCCCGCCGAACCCGGCTCTGCCCAACAACAATGGTGGTTGGTGCAACCCTCCTTTGCAGCACTTTGATATGGCTGAGCCAGCATTCTTGCAAATTGCTGAATATAGGGCTGGAATTGTGCCTGTTGCTTTTAGAAGAGTTCCTTGCATGAAGAAGGGAGGAATAAGATTCACCATCAATGGCCACTCTTACTTCAACCTAGTTTTGGTAACAAACGTTGGAGGTGCTGGTGATGTTCATTCAGTTTCCATCAAAGGATCAAGAACTGGGTGGCAATCAATGTCAAGAAACTGGGGGCAAAATTGGCAAAGCAACTCATACCTCAATGGTCAAACCCTCTCATTCCAAGTCACCGCCAGTGACGGTAGAACTGTCACAAGCTTCAACGTGGCACCATCTAATTGGCAGTTTGGTCAAACCTTTCAAGGAAGCCAATTCTAG 771 0.4643 MPQQEFSMALMILLIVLSIDMIIMQGATADYGGWESAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCNDDPRWCKPASIIVTATNFCPPNPALPNNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCMKKGGIRFTINGHSYFNLVLVTNVGGAGDVHSVSIKGSRTGWQSMSRNWGQNWQSNSYLNGQTLSFQVTASDGRTVTSFNVAPSNWQFGQTFQGSQF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00270 256 PANTHER EXPANSIN 5 256 - -
Aip01g00270 256 Pfam Lytic transglycolase 69 153 IPR009009 -
Aip01g00270 256 PANTHER EXPANSIN-A15 5 256 IPR002963 GO:0009664
Aip01g00270 256 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Aip01g00270 256 SUPERFAMILY Barwin-like endoglucanases 33 182 IPR036908 -
Aip01g00270 256 Gene3D - 21 160 IPR036908 -
Aip01g00270 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 164 IPR007112 -
Aip01g00270 256 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Aip01g00270 256 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Aip01g00270 256 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Aip01g00270 256 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Aip01g00270 256 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Aip01g00270 256 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Aip01g00270 256 Gene3D - 164 256 IPR036749 -
Aip01g00270 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Aip01g00270 256 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Aip01g00270 256 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Aip01g00270 256 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Aip01g00270 256 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Aip01g00270 256 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Aip01g00270 256 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Aip01g00270 256 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Aip01g00270 256 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Aip01g00270 256 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Aip01g00270 256 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Aip01g00270 256 SMART dpbb_1 69 154 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00270 Aip-Chr1 2897635 2903629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00270 6 256 Expansin Gene Family AT2G40610 77.778 2.22e-151 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00270 - - gmx:100499976 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00270 01 2897635 2903629 Aip01g00270 01 2897635 2903629 ECH
Aip01g00270 01 2897635 2903629 Aip10g02185 10 97687434 97689343 ECH
Aip07g01249 07 19636461 19638786 Aip01g00270 01 2897635 2903629 ECH
Aip01g00270 01 2897635 2903629 Aip07g01249 07 19636461 19638786 PCT