Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00264 ATGGCTAGAAAGAAAGTGGAGTTCAAATACATAGCAAATGACTCAAAGAGGAAGGCAACACAAAAAAAACGGAAAAGTGGTCTGACAAAAAAGGTTGATGAGATTAGCACTCTTTGCGGAGTTGATGCGTGTGCTATAATTTATACCCCTGATGAACCACGGCCAGAGGTATGGCCGTCGCCATTAGAGGTGAACCGAGTGATCTCTAGATTTAAGGAAATGCCTGAATTAGATCAAAGTAAGAAAATGATGTCTCAAGAGAGCTTCTTGAGACAAAGGATCCAGAAAGGCCAAGATCAACTAAAGAAACTAAAAAATGAGAATAGAAAGAAAGAGATGAACAATCTCATGTTTCAATCCTTAGGTGGCTACCAATCCCTTGACAATGCCACCATGATTGATCTCAATGATCTTGCATGGATCATTGATCAAAATATCAAGGAGGTCAACAAGCAAATTAGCAAGCTTCAAGGGCAAGAAGGGACTAGTAGTAATAATAATAGAGTAGCAACCATCAATGAAGAGCAAGCTCAAGTGGACAATATCATCAACGATGAGTTGGCTGAGCTGTCAAACGGAGTCCGTTACACCCTTTCTTCTGCTTCTCCTTCATTCTTCCTCACTTCCTCCCTCCCCAAAGCAACTACAACAACAATAAACAACATCTCAGTCACTCGTTTCCCTCCCCTAAACCTCCAAAAAGCCGCTACAAGCTTCAACAACAACAACATATCTCAATCACCCCAAAATTACAATAACGACAACAACATCATCTTCCTAGCTGAAGCTCCTACAACAACATCTTCCTCACTATTTCTCTCATCAAATACGATGTCGGCTCTTCTTCCACAGTTTCTCTCCCTCAAGTACGACAATGGTCTTGCTCTTTGCCAGTGTCATCTTGCTCATCCACTTCTCCTTTTTTGA 927 0.4121 MARKKVEFKYIANDSKRKATQKKRKSGLTKKVDEISTLCGVDACAIIYTPDEPRPEVWPSPLEVNRVISRFKEMPELDQSKKMMSQESFLRQRIQKGQDQLKKLKNENRKKEMNNLMFQSLGGYQSLDNATMIDLNDLAWIIDQNIKEVNKQISKLQGQEGTSSNNNRVATINEEQAQVDNIINDELAELSNGVRYTLSSASPSFFLTSSLPKATTTTINNISVTRFPPLNLQKAATSFNNNNISQSPQNYNNDNNIIFLAEAPTTTSSSLFLSSNTMSALLPQFLSLKYDNGLALCQCHLAHPLLLF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00264 308 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Aip01g00264 308 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Aip01g00264 308 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Aip01g00264 308 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip01g00264 308 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip01g00264 308 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Aip01g00264 308 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Aip01g00264 308 Coils Coil 87 114 - -
Aip01g00264 308 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 226 - -
Aip01g00264 308 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip01g00264 308 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00264 Aip-Chr1 2831480 2833370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00264 1 170 Type I MADS-box Gene Family AT5G48670 51.163 6.99e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aip01g00264 SRF-TF 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00264 - - aip:107644294 326.635