Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00263 ATGGACCCTGACATTGCGCGGTGGGTTGCGGAATTCCACCTCCGGAGTTCCGCCCCCGACTCCCTCGTCTCCAAGATCCTTAAGGTCCTTAATCTCTCCGGCGCCGATCCCAACCTTAAGAAAACCCTACACCTCCGCACCCTCCGATCCCAACTCTGCAATGCCTCAATCACCGAAACCGCTCTCGAGATACTGGAGCAAATCGAAGCGATTGACCGAAACGACGCCGTTCCGATCATCGATTCCATGCGCAGAGCCTACTGCGCCGTCGCCGTCGAGTGCACCGTCAAGTACCTCGCCGCCTCCGACGACGGCACCACCAGCGGTAAGTACTTATCCGCGGTGACGCGTATCTGGCGCGGCCGCGTGGAGGAGTTGGAGCAGCGCCAGAGCGAGCTGTTCTTCGACGAGACTGCGCGATGGAGGGACGACATTGAGGCCGCACTTTTTGACACTAGAGTTTCTGATAGGTTGAAGGAGTTGAATACCCGAAACGACGCGTTTACTGAAGTTAGGTTTTATCTGCAGGAAGTGTGGGAAACAATGGGTCCTTCTTTTCTTGAATCGGTAGCAGAAATGACAAAGAACAAGGTAAAGACGAAGGGCAAGGGGAAAGGATTGCCGAATGTGATTTTGAATCCGGTGCCGGAGACTATAGTGGCAGGGTGTACCACAGGTGTTTGCAGAAATGCCTCTGGTGCTGAACAGGCAAGGGATCATGGTGTTGATGACAATGGTGACGGAGACAATGATGGTTCACGTTGCATGGACGGTGTTGAGGTGAAGAGAGCTGAAGGTTCTGTTGATGGAACCCAGGAGCATGCAAAGAAGAAGAAAGCAAGAGGCAGTCCTCAACTTCAACGCAAGCCGCCTGCATTTCGTAGATGCAGTAGAGGAGTTAAAATGTCTACTGCTGAGGAATTGGGGACAGAAAGATCATGGAGAAAAAATGATACAAATCATGATAGATCTAAACTTGCACGGAAAGGCACAAATCATGAACAGCCAATGGAAAACCATAGCGGAGATGTAGATGTACGAAACTCAAATACTTGCAGGACTATTTTTCCTTATCAACCTAAAGATGCCGAGCACAAGAAGTCGCCTTCTGTTCATCATAGTAGAGTTAAAGCTGAACGTCCCAATTCAATTGAGCTGAACAAAACTGCTCATAAAAGACCCAAATTGATGGAGCCGAGTGGTACTTCTCAAACTTATGAGTGGAATGATTCAATAGAAAACATGCCCGATGGAATGCAGCCAAGAAGGAAGAATAGAAAATGGTCTTCATTAGAAGAGGAGACACTAAGGACTGGTGTACAAATGTTTGGTGCAGGAAATTGGAAAACAATTCAAAGTTTTTACAGTAATGTATTTGAACATAGACAAGCAGTTGATTTGAAGGACAAGTGGAGAAACATGATGCGGTAG 1431 0.4822 MDPDIARWVAEFHLRSSAPDSLVSKILKVLNLSGADPNLKKTLHLRTLRSQLCNASITETALEILEQIEAIDRNDAVPIIDSMRRAYCAVAVECTVKYLAASDDGTTSGKYLSAVTRIWRGRVEELEQRQSELFFDETARWRDDIEAALFDTRVSDRLKELNTRNDAFTEVRFYLQEVWETMGPSFLESVAEMTKNKVKTKGKGKGLPNVILNPVPETIVAGCTTGVCRNASGAEQARDHGVDDNGDGDNDGSRCMDGVEVKRAEGSVDGTQEHAKKKKARGSPQLQRKPPAFRRCSRGVKMSTAEELGTERSWRKNDTNHDRSKLARKGTNHEQPMENHSGDVDVRNSNTCRTIFPYQPKDAEHKKSPSVHHSRVKAERPNSIELNKTAHKRPKLMEPSGTSQTYEWNDSIENMPDGMQPRRKNRKWSSLEEETLRTGVQMFGAGNWKTIQSFYSNVFEHRQAVDLKDKWRNMMR 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00263 476 SMART sant 424 476 IPR001005 -
Aip01g00263 476 PANTHER MYB TRANSCRIPTION FACTOR 1 476 - -
Aip01g00263 476 SUPERFAMILY Homeodomain-like 421 475 IPR009057 -
Aip01g00263 476 Gene3D - 428 476 - -
Aip01g00263 476 CDD SANT_TRF 426 476 - -
Aip01g00263 476 MobiDBLite consensus disorder prediction 236 280 - -
Aip01g00263 476 MobiDBLite consensus disorder prediction 394 430 - -
Aip01g00263 476 Pfam Myb-like DNA-binding domain 427 474 IPR001005 -
Aip01g00263 476 PANTHER MYB TRANSCRIPTION FACTOR 1 476 - -
Aip01g00263 476 ProSiteProfiles Myb-like domain profile. 420 475 IPR001005 -
Aip01g00263 476 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 420 476 IPR017930 -
Aip01g00263 476 MobiDBLite consensus disorder prediction 236 348 - -
Aip01g00263 476 MobiDBLite consensus disorder prediction 308 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00263 Aip-Chr1 2818631 2822236 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00263 428 475 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 4.27e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip01g00263 Myb_DNA-binding 1.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00263 - K11111 ahf:112794013 820.076