Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00262 ATGGATCCTGACATTGCGCGGTGGGTTGCGGAATTCCACCTCCGGAGTTCCGCCCCCGATTCCCTCGTCTCCAAGATCCTTAGGGTCCTTAATCTCTCCGGCGCCGATCCCAAACTTAAGAAAACCCTACTCCTCCGCACCCTCCGATCCCAACTCTGCAATGCCTCAATCACCGAAACCGCTCTCGAGATACTGGAGCAAATCGAAGCGATTGACCGAAACGACGCCGTTCCGATCATCGATTCCATGCGCAGAGCCTACTGCGCCGTCGCCGTCGAGTGCACCGTCAAATTCCTCGCCGCCTCCTACGACGGGACCACCAGCGGTGAGTACTTATCCGCGGTGACGCGTATCTGGCGCGGCCGCGTGGAGGAGTTGGAGCAGCGCCAGAGCGAGCTGTTCTTCGACGAGATTGCGCGATGGAGGGACGACATTGAGGCCGCTCTTTTTGACACTAGGGTTTCTGATAGGTTGAAGGAGTTGAATACCCGAAACGACGCGTTTACTGAAGTTAGGTTTTATCTGCAGGAAGTGTGGGAAACAATGGGTCCTTCTTTTCTTGAATCGGTAGCAGAACAAAGAACAAACAAGGTAAAGACGAAGGGCAAGGGGAAAGGATTGCCGAATGTGATTTTGAATCCGGTGCCGGAGACTAGAGTGGCAGGGTGTACGACAGGTGTTTGCAGAAATGCCTCTGGTGCTGAACATGCAAGGGATCATGGTGTTGATGACAATGGTGACGACGACAATGATGGTTCACGTTGCATGGACGGTGTGGAGGTGAAGAGAGCTGAAGGTTCTGTTGATGGAACCCAGGAGCCTGCAAAGGAGAAGAAAGCAAGAGGCAATCCTCAACTTCAACGCAAGCTGCCTGCATTTCGTAGATGCAGTAGAGGAGTTAAAATGTCTAGTGCTGAGGAATTGGGGACAGAAAGATCATGGAGAAAAAATGATACTGTGCTAAGTGGAGAAGTTAAAACGGCCCGAGAATCTCTTAAATCAAGTTTTTCAGAGCTACGAGCATTGGTCAATGATCCTCTTCCCGAGGCATTGGATATATCTGATGCTGTTAGATCTAAACTTGCACGGAAAGGAACAAATCATGAACAGCCAATGGAAAACCATAGCAGAGATGTAGATGTACCAAACTCAAATACTTGCAGGGCTATTATTCCTTATCAACCTAAAGATGCGGAGCACAAGAAGTCGCCTTCTGTTCGTCATAGTAGAGTTAATGCTGAACGTCCCAATTCAACTGAGCCAAACAATACTGCTCATAAAAGACCCAGTTTGATGGAACCGAATGGTACTTCTCAAACTTATGAGTGGAATGATTCAATAGAAAACATGCCCAATGGAATGCAGCTAAGAAGGAAGAAAAGAAAATGGTCTTCATTGGAAGAGGAGACACTAAGAACTGGTGTACAAATGTTTGGTGCAGGAAATTGGAAAACAATTCAAAGTTTTTACAGTGATGTATTTGAACATAGACTAGCAGTTGATTTGAAGGACAAGTGGAGAAACATGATGCGGTATTGA 1539 0.4769 MDPDIARWVAEFHLRSSAPDSLVSKILRVLNLSGADPKLKKTLLLRTLRSQLCNASITETALEILEQIEAIDRNDAVPIIDSMRRAYCAVAVECTVKFLAASYDGTTSGEYLSAVTRIWRGRVEELEQRQSELFFDEIARWRDDIEAALFDTRVSDRLKELNTRNDAFTEVRFYLQEVWETMGPSFLESVAEQRTNKVKTKGKGKGLPNVILNPVPETRVAGCTTGVCRNASGAEHARDHGVDDNGDDDNDGSRCMDGVEVKRAEGSVDGTQEPAKEKKARGNPQLQRKLPAFRRCSRGVKMSSAEELGTERSWRKNDTVLSGEVKTARESLKSSFSELRALVNDPLPEALDISDAVRSKLARKGTNHEQPMENHSRDVDVPNSNTCRAIIPYQPKDAEHKKSPSVRHSRVNAERPNSTEPNNTAHKRPSLMEPNGTSQTYEWNDSIENMPNGMQLRRKKRKWSSLEEETLRTGVQMFGAGNWKTIQSFYSDVFEHRLAVDLKDKWRNMMRY 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00262 512 MobiDBLite consensus disorder prediction 236 308 - -
Aip01g00262 512 Gene3D - 463 512 - -
Aip01g00262 512 PANTHER MYB TRANSCRIPTION FACTOR 1 512 - -
Aip01g00262 512 CDD SANT_TRF 461 511 - -
Aip01g00262 512 SUPERFAMILY Homeodomain-like 457 511 IPR009057 -
Aip01g00262 512 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 457 512 IPR017930 -
Aip01g00262 512 SMART sant 459 512 IPR001005 -
Aip01g00262 512 MobiDBLite consensus disorder prediction 361 437 - -
Aip01g00262 512 MobiDBLite consensus disorder prediction 394 409 - -
Aip01g00262 512 MobiDBLite consensus disorder prediction 410 437 - -
Aip01g00262 512 MobiDBLite consensus disorder prediction 361 376 - -
Aip01g00262 512 ProSiteProfiles Myb-like domain profile. 455 510 IPR001005 -
Aip01g00262 512 MobiDBLite consensus disorder prediction 236 284 - -
Aip01g00262 512 PANTHER MYB TRANSCRIPTION FACTOR 1 512 - -
Aip01g00262 512 Pfam Myb-like DNA-binding domain 460 509 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00262 Aip-Chr1 2810169 2813990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00262 463 510 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 1.10e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip01g00262 Myb_DNA-binding 5.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00262 - K11111 ahf:112794013 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00262 01 2810169 2813990 Aip01g00262 01 2810169 2813990 ECH