Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00260 ATGGCTACACATATGCAAGATCCACCTTCGAAATCTAACCCTAACAATCCCAATGCAAACAACAATGCCGTCAATGCTCATCAATTACCTCCTCAACCTCCGCCTACGGCGGCGGTTCCGCCATCTTCCACCGGCGTAACCTCATCCGTATTCATCCGCGGTGACGGTTGTGAAGGTGGCAGTCCGAACGCGCATCACCGGAGGGCTCACTCGGAGGTCAGTTTCCGGCTGCCGGACGACATGATGGACCTATCGCCGTCGGATCCGTTCACCGGCGGCTCATCCACCGCCAGCCTCGAGGAGATCGGATCCGAGGACGACCTCTTCTCTACCTACATTGACGTCGAGAAGCTCAGCGGCGGAGGAGGGGCTTCGAACGGTTCGATTCAGGGCGGAAATGGATTAGATCAGAGCAGTTACGGCGGCGCCGGAACAAGCGGCAACAACGAGGAAGATAAGAGCCCTGGTGGAAACGGTAGCGCTGGCGCCGGAGGAGCTAGGCCGAGGCACCGGCATAGTAACTCCGTCGACGGTTCTACGACAGGCGTGTTCGGAGAGATCATGGAGGCGAAGAAAGCAATGCCTCCTGATAAGCTCGCTGAGCTATGGACCATTGATCCGAAACGCGCCAAGAGAATACTTGCTAATCGGCAATCTGCTGCACGTTCAAAAGAGAGAAAGGCCCGCTATATACAAGAACTCGAGCGCAAAGTTCAGACCCTTCAGACCGAAGCTACAACTCTTTCTGCCCAATTGACCCTATACCAGAGGGACACAACAGGTCTGAGTAGTGAAAATACCGAGCTCAAACTTCGGCTACAAGCCATGGAACAACAAGCACAACTTCGCGATGCTCTTAACGACGCATTGATGAAAGAAGTAGAGAGGCTAAAGATTGCCACCGGGGAGGCAATGAAGCCCTCTGAATCTTTTAATCTAGGAATGCAACAGATGCAATTTGCAGGGTCAAATTTTTTTCCAGTCCCACAAAGTTCAGGTCCTCCTGGTCTGCAGAGCATACCAATGATGTCATTCTGTCACCCCCCATCCAACATTCCTCATGAAATGCAACATTCAAATTCTCATCAACTCGCTGATATATTGCATAACGACCAGCTCGGTCGCTTGCAGGGACTCGACATTAGCAGCAAAGGATCAACCCTTGTGAAAGCCGAAGGCCCCTCACTTTCTGCGAGTGAGAGCAGCAATACATTTTGA 1218 0.5238 MATHMQDPPSKSNPNNPNANNNAVNAHQLPPQPPPTAAVPPSSTGVTSSVFIRGDGCEGGSPNAHHRRAHSEVSFRLPDDMMDLSPSDPFTGGSSTASLEEIGSEDDLFSTYIDVEKLSGGGGASNGSIQGGNGLDQSSYGGAGTSGNNEEDKSPGGNGSAGAGGARPRHRHSNSVDGSTTGVFGEIMEAKKAMPPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTTGLSSENTELKLRLQAMEQQAQLRDALNDALMKEVERLKIATGEAMKPSESFNLGMQQMQFAGSNFFPVPQSSGPPGLQSIPMMSFCHPPSNIPHEMQHSNSHQLADILHNDQLGRLQGLDISSKGSTLVKAEGPSLSASESSNTF 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00260 405 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 206 269 IPR004827 GO:0003700|GO:0006355
Aip01g00260 405 SMART brlzneu 204 268 IPR004827 GO:0003700|GO:0006355
Aip01g00260 405 CDD bZIP_plant_RF2 209 258 IPR044759 GO:0003700|GO:0006355
Aip01g00260 405 SUPERFAMILY Leucine zipper domain 208 259 IPR046347 GO:0003700|GO:0006355
Aip01g00260 405 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 1 402 - -
Aip01g00260 405 PANTHER BZIP TRANSCRIPTION FACTOR 1 402 - -
Aip01g00260 405 Pfam bZIP transcription factor 208 266 IPR004827 GO:0003700|GO:0006355
Aip01g00260 405 MobiDBLite consensus disorder prediction 123 181 - -
Aip01g00260 405 Gene3D - 207 260 - -
Aip01g00260 405 MobiDBLite consensus disorder prediction 60 77 - -
Aip01g00260 405 MobiDBLite consensus disorder prediction 1 27 - -
Aip01g00260 405 MobiDBLite consensus disorder prediction 1 103 - -
Aip01g00260 405 Coils Coil 224 251 - -
Aip01g00260 405 MobiDBLite consensus disorder prediction 123 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00260 Aip-Chr1 2782486 2785656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00260 13 405 bZIP Transcription Factor Family AT2G40620 49.761 2.28e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Aip01g00260 bZIP_1 4.1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00260 - - gmx:100775607 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00260 01 2782486 2785656 Aip01g00260 01 2782486 2785656 ECH
Aip01g00260 01 2782486 2785656 Aip07g01247 07 19577122 19580355 PCT