Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00244 ATGGGTTCCGACATTTGCGTCAATGGTTCTTGCTGCGTGCACGAATGGAAGAAGGGATGGCCTCTACGATCTGGTGGATTCGCCCAACTATGCATCAAGTGCGGATTTATGGAGGAATGGAAGCGTGAGATAATTGATACATTATCTGCAAATGAGTATTCACTATTCTGTAATAACTTCCACCGTCGCGATACTGGATGGAAGGAGTGTAACTTTTGCAACAAGCCTATCCATTGTGGATGCATAGTATCTAAATCTTTGTTCGAGTACCTTGACTTTGGCGGTGTAGGATGTGTTAGCTGTGTAAATGCTTCCCAACTACGTTTGACGAGGAATACTGAAAATGGGTCTGTTTCGACTACTAAAAATAATGCAAGTGATCGGCATTCTGCTCATATTGACAACAGACAGTTTGTCAGTAGCGTGGATGAAGGAAAACTTATGGAGTTCTGCAGAATTGTTGAAGCTAGCGAATCAAGCCGTTGGAATCATGCTCAGAGAGACAACATAATCTCATGTAATGGGCAAAATGGCAAAGAAGTGACATTCAGGGAAGTGGAAAGTGGATTTTCAAATGTGATAAAGCCATCGGTTCAGTCATTAACGTTTTCTGCTTTAGAAAATAGTAGACCGACATGGGAGATTAAAAATAGACATGAACCAATGACTCAACCATCTTTAAACATGTGTCTGGGAAATCCGTCTGGGAGCAACTTGGTACTGCCTTCAGCAACTGAGATTGCAGAAGGAAGACTTGAGAGCAAAGCCTCCAACTTTCAACAAAGATCTCGGCCCATATTGCCCAAACCATCGAAGACCGGACTTACTATGAATGTGGAAACAGACAAAGGCTCAACTTCTCAGGCACGCATTGCTCGACCACCTGCCGAGGGGAGGGGCAAAAACCAGTTGCTTCCTCGATACTGGCCCAGGATTACTGATCAAGAACTGGAGCGGTTGTCTGGAGATTTGAAGTCCACTGTAGTGCCGTTGTTTGAGAAGGTGTTGAGTGCTAGTGATGCTGGTCGAATTGGTCGACTTGTTCTCCCAAAAGCATGTGCCGAGGCTTATTTTCCTCATATTTCACAATCAGAAGGTCTTCCTTTACGGGTCCAAGACGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATAACAATAGTCGGATGTATGTATTGGAGGGTGTGACACCTTGCATACAGTCCATGCAATTACGTGCTGGTGATACTGTTACATTTAGTCGGATAGACCCTGGGGGTAAACTTGTTATGGGTTTCAGGAGGGCGACAAATTCTTCAGACACCCAGGATGCCTCTACATCTGCACAATCGAATGGTATTTCAACTACAGGAACCACCTCTGGTGGAACTGAGAATCTGCCATCAGGAAGTAATTATGCTGATCTTCTCCAGTCGGCGAAAGGGAATGGGGAACCTAATTCTAGTGGACATCCAGACCATCCACGTTCAGGTACTGGAGCTGCCGCTGTGCTTAAAACCGAAAATTGTGAGGAGATGATAAACAATCATTCCCTTAAGCAACCAATTCCAGTTTCAGAGAAGAAGAGGACTCGCAATATTGGGCCTAAAAGTAAGAGGTTGCTTATTGATAATGAAGATTCTATGGAGTTGAGACTTACCTGGGAAGAAGCACAGGACTTGCTTCGTCCGCCACCTAGTGTTAAGCCAAGTATTGTCACCATTGAGGACCAAATATTTGAAGAATATGATGAGCCCCCGGTTTTCGGAAAGAGGACTATTTTCAGTGCCTGTTCATCTGGGGGGAAGGAGCAGTGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTTCCCGTCGATGCTCTTCTTCCTCCCAAGTGGAATTGCTCTGAGAATGTTTGGGATGCAAGCAGGGCTTCATGTTCTGCTCCAGAGGAGATGAGTTCAAGGGAATTAGAAAATCTTCTGAGAACCAACAAAGATCTTAAGAAGCGGAGAATTGCTGAGAATAATAAACCAATCCAAGAGCATGAGCCTTCTGGGTTGGATGCTCTTGCCAGTGCCGCGGTTTTAGGAGACAATCTTGTTGATCCTGTGGAGTCATCAGCTGGAGCCACCACCAGACACCCTAGACACCGTCCCGGCTGCTCCTGTATTGTGTGCATTCAACCACCAAGTGGAAAGGGGAGACACAAGCCAACATGTACTTGCAACGTGTGCATGACCGTGAAGCGCCGGTTCAAAACCCTGATGCTTAGAAAGAAGAAGCGCCAATCGGAGCGCGAAGCAGATGCTGCTCAAAAAGGTCATATTCCCCGAAAAGACGAGTCAGATACCAATGGAAGAGCTTCAAGAGATTATCCTAAACCGAGTCACTCGGACAAAGAGGGAGGACTAAACAAAGATCAACAACCAGCCCATGTGGGAGAGTCGAATGCCGGACAAATAGACCTGAACTCGCATCCGAATCGCGACGACATGGCAGCCGATACATCGGCGCCTAGCACCTCGAATCATCTTGAAACAACAAACCGAGAGGTAAGGAACTATATGAATCAAAATGGTGTTAGAAGCTACAATAATGGTGAAGTGCAGGATAATCAGCATCCTTCTTTACTCAATCAATCTAATGGAGGGTGCTTTGGATCATCCATTGTGTGGAAAATGGAAAGAAAAGATGAGGTTTACAATCATGCCAATCAAAGTCAAAGCCATAGTCAAAACAACAATCTTTCTTGA 2730 0.452 MGSDICVNGSCCVHEWKKGWPLRSGGFAQLCIKCGFMEEWKREIIDTLSANEYSLFCNNFHRRDTGWKECNFCNKPIHCGCIVSKSLFEYLDFGGVGCVSCVNASQLRLTRNTENGSVSTTKNNASDRHSAHIDNRQFVSSVDEGKLMEFCRIVEASESSRWNHAQRDNIISCNGQNGKEVTFREVESGFSNVIKPSVQSLTFSALENSRPTWEIKNRHEPMTQPSLNMCLGNPSGSNLVLPSATEIAEGRLESKASNFQQRSRPILPKPSKTGLTMNVETDKGSTSQARIARPPAEGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPHISQSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGKLVMGFRRATNSSDTQDASTSAQSNGISTTGTTSGGTENLPSGSNYADLLQSAKGNGEPNSSGHPDHPRSGTGAAAVLKTENCEEMINNHSLKQPIPVSEKKRTRNIGPKSKRLLIDNEDSMELRLTWEEAQDLLRPPPSVKPSIVTIEDQIFEEYDEPPVFGKRTIFSACSSGGKEQWAQCDDCSKWRKLPVDALLPPKWNCSENVWDASRASCSAPEEMSSRELENLLRTNKDLKKRRIAENNKPIQEHEPSGLDALASAAVLGDNLVDPVESSAGATTRHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAQKGHIPRKDESDTNGRASRDYPKPSHSDKEGGLNKDQQPAHVGESNAGQIDLNSHPNRDDMAADTSAPSTSNHLETTNREVRNYMNQNGVRSYNNGEVQDNQHPSLLNQSNGGCFGSSIVWKMERKDEVYNHANQSQSHSQNNNLS 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00244 909 MobiDBLite consensus disorder prediction 274 288 - -
Aip01g00244 909 CDD B3_DNA 330 431 IPR003340 GO:0003677
Aip01g00244 909 SUPERFAMILY DNA-binding pseudobarrel domain 330 432 IPR015300 -
Aip01g00244 909 MobiDBLite consensus disorder prediction 433 490 - -
Aip01g00244 909 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 860 - -
Aip01g00244 909 MobiDBLite consensus disorder prediction 748 841 - -
Aip01g00244 909 MobiDBLite consensus disorder prediction 433 496 - -
Aip01g00244 909 ProSiteProfiles B3 DNA-binding domain profile. 332 433 IPR003340 GO:0003677
Aip01g00244 909 MobiDBLite consensus disorder prediction 752 798 - -
Aip01g00244 909 Gene3D - 599 654 - -
Aip01g00244 909 Gene3D - 310 437 IPR015300 -
Aip01g00244 909 Pfam B3 DNA binding domain 332 432 IPR003340 GO:0003677
Aip01g00244 909 ProSiteProfiles Zinc finger CW-type profile. 596 646 IPR011124 GO:0008270
Aip01g00244 909 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 860 - -
Aip01g00244 909 MobiDBLite consensus disorder prediction 802 841 - -
Aip01g00244 909 Coils Coil 642 669 - -
Aip01g00244 909 SMART B3_2 332 433 IPR003340 GO:0003677
Aip01g00244 909 MobiDBLite consensus disorder prediction 264 302 - -
Aip01g00244 909 Pfam CW-type Zinc Finger 601 643 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00244 Aip-Chr1 2540918 2549048 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00244 1 826 B3 DNA Binding Superfamily AT2G30470 49.821 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aip01g00244 B3 1.5e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00244 - - gmx:100789848 1349.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00244 01 2540918 2549048 Aip01g00244 01 2540918 2549048 ECH