Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00242 ATGAATGAGCAATATCAGGAGGACGATGACTTTAACCAACAAGAAGAGCTAGTAACTGACCAAGATATGATGGATGAACAGAATGAATTCGAACAAGATTTCAGAGATATCATAATCGAGGGAGCGTTTTTTTCTGAATCTGATACGTCAGATTATATCGTTGAAGCCGCTTATGCGGTTGACTCCGTGCAAGACATTACATCTGTGAAATTTAGTGAGAATTTTGCGGAGGAAATTGGCAAATACCACTTTTCTACTTTGCAGCTTGCATTTGATTTTTATATGAAGTACTCAAAGTCGAAGGGCTTTAGTGCAAGGAAGAGCAAGACCTTCAAGAATAGTAGTGGCGATATTTACAGACAACTGTTTGTATGCCACAGGCAAGGATTCAGGATGGAGAAATATTACACGATGGAAAAAAGGAAGAAGGAGCCTAGGTTGGAAACAAGAACTGGATGTGAAGCCCGAATGGATGTTAAATTTGTACCAGAAAGTGGAAGGTGGCATATCTTTTATTTCTCTGACGAACACAACCATGATCTATTGGATACACAATTCAGTGCTATGTTGCCTGCCCACAGAAAAATGTCAGAGGCAGATATTATGCAAATGATGAACATGCTAAAGTCAGAGATTAGCACCTCACAGATATTTAGTCTTCTAGCTAGCCAAGCAGGCGGATACGAATTTGTTGGCTATGGTCCCCGAGATATGTACAATAAGATTGCTCGGGAGAGGCGTCAAATTCCTGGTGATGCAGCACGAGTGTTGAAGAAGTTGGAGGATATGCGGTTGAAGGATCCACAATTATATTTCAAGGCATGTCACGATTCAAGAGGTCTGTTACGTAATTTGTTCTGGTCTGATGGGATTAGCCAACTAGACTACCGACTCTTCGGGGATGTTATTGCTTTTGATGCTACGTACAAGAAGAACAAGTATAGTTGTCCATTAGTCATATTCAGCGGGGTTAACCACCACAACCAAACAACTGTTTTTGCTGCTGCGTTAATCGCAGACGAAACTACTGATACATATGTTTGGCTCCTGCGTCAGCTCATGTTTGCAATGAGGGGCAAGACCCCGACCTCAATCATAACTGATGGGGCCATGGCGATTAGGAATGCAGTGAGAGATGTATTTCCCGAAACTTGTATAGAGCTGCTAGAGAGATATGCTGCTGAGTTATACACTCATGAGATATTTCTTTTCTTTCGGCCATTTCTCTCCAGAGCTGGATCAATGCGGGTTCTGAACATAGATAATACCGATGATTGCATAAAGTACATTGTGTGTAAGCATGGGAGGCCCGATTTTACGTGGACCGTTGATTTTTGTCAAGAAAAATTGATCTTCATGTGTACCTGTTTACGAATGGAGTCATTTGGTATTCCCTGCGAACATATTGTGAAAGTTCTGGTTGACAGAGACATCCGTGAGATTCCCCAGTCATTGGTATTGGATAGATGGACAAAAAAGGTTAAATCAGCACTCAATGATCCAAGTGGGTTCACCAGGGATGCTGTTGTTATTAGTCGTCAAAGTGCTTTGGTGGAATTTTCTAAACAACTGGCTGCTGTTGCTGCTAAAGTACCAGAGAGATATGAAGAGACACGTGATTTAATTATGGGATTGTACTCATCTTACAAGGCTGCAGACGAAGGAGATAATCAACCTCACTCAGGTGTTGCTAGAAGTATCAATCCGTATGTGCATCCAACCACTGGAGGCTCAGGACAGCCATCTAAGAGGAAGAAGCGGCAACGTTGTAGTGTTTGTCAAATGGAAGGACATAAGAAGACAACATGTCCTTGGCAAAAGGACATTGACAACAACGTTTTAGAAAATGAAGCAATCGGTTCGGACGATGGCGACATGTGTACCGAAGCAACGGCTGAGTTAGATAGTGATAGTTAG 1917 0.4204 MNEQYQEDDDFNQQEELVTDQDMMDEQNEFEQDFRDIIIEGAFFSESDTSDYIVEAAYAVDSVQDITSVKFSENFAEEIGKYHFSTLQLAFDFYMKYSKSKGFSARKSKTFKNSSGDIYRQLFVCHRQGFRMEKYYTMEKRKKEPRLETRTGCEARMDVKFVPESGRWHIFYFSDEHNHDLLDTQFSAMLPAHRKMSEADIMQMMNMLKSEISTSQIFSLLASQAGGYEFVGYGPRDMYNKIARERRQIPGDAARVLKKLEDMRLKDPQLYFKACHDSRGLLRNLFWSDGISQLDYRLFGDVIAFDATYKKNKYSCPLVIFSGVNHHNQTTVFAAALIADETTDTYVWLLRQLMFAMRGKTPTSIITDGAMAIRNAVRDVFPETCIELLERYAAELYTHEIFLFFRPFLSRAGSMRVLNIDNTDDCIKYIVCKHGRPDFTWTVDFCQEKLIFMCTCLRMESFGIPCEHIVKVLVDRDIREIPQSLVLDRWTKKVKSALNDPSGFTRDAVVISRQSALVEFSKQLAAVAAKVPERYEETRDLIMGLYSSYKAADEGDNQPHSGVARSINPYVHPTTGGSGQPSKRKKRQRCSVCQMEGHKKTTCPWQKDIDNNVLENEAIGSDDGDMCTEATAELDSDS 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00242 638 Pfam FAR1 DNA-binding domain 92 182 IPR004330 -
Aip01g00242 638 MobiDBLite consensus disorder prediction 617 638 - -
Aip01g00242 638 MobiDBLite consensus disorder prediction 554 589 - -
Aip01g00242 638 PANTHER OS03G0181600 PROTEIN 391 540 - -
Aip01g00242 638 ProSiteProfiles Zinc finger SWIM-type profile. 439 477 IPR007527 GO:0008270
Aip01g00242 638 Pfam MULE transposase domain 302 384 IPR018289 -
Aip01g00242 638 PANTHER OS03G0181600 PROTEIN 70 386 - -
Aip01g00242 638 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 70 386 IPR031052 GO:0006355
Aip01g00242 638 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 391 540 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00242 Aip-Chr1 2504971 2510096 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip01g00242 FAR1 5.7e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00242 - - ahf:112728364 840.491