Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00237 ATGTCGTATGTGCCTCCACACCTCAGAAACTCAACCACCACAACAACAACCACTACCACCACCACCACGACGGCGAAAACCTCCTCCGTAACCCAAGAAAACAACAACGACAATATCAGCAACAATGTTAACCATCAAACTAAGCTCGCATTCCCTTCTTATTCAAACTCACACTCTCACTCTCACTCCAACGGCACCAATGGAACCAATGGCAACGCCAACAACCACAATTCTGTGTCCCATGGTTCTCGCCGCCCCACCGCCACTCCGCAGCCGTCACGGATTTTCGCAGCTCCCGAGCCAGTTTTCCCTCACTGGCAGCCATCCGAGCGCGTTTCACGCATGAGCCCCGACCAGATTGAAGAGGTCCGCCTCCGACTTAACCTTGATGTCACTATTGCATCAGACTCTCCAGCTGCTCCTGCACCAATTGAATCATTTAGTGATATGTGTGTCCATCCAAGTATCATGAAGGATATTGCATATCATGAATACACCAGGCCAACTTCTATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTACTTGGCTGTGCTGAAACTGGTAGTGGGAAAACTGCAGCTTTCACAATTCCTATGATACAGCATTGCATGGCTCAATCTCCTATTCGGCGTGGTGATGGTCCTCTGGCATTAGTTTTGGCTCCTACTAGAGAACTTGCTCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCTCTCGAGTCATTGAAAACTGCCATAGTTGTGGGTGGAACTAACATTGAAAAGCAGAGGTCTGAGCTAAGAGCAGGAGTTGAAATTGCTGTTGCAACCCCTGGAAGATTTATTGATCATTTACAACAAGGCAATACTTCCCTTTCTAGAATTTCTTTTGTTGTTCTAGATGAAGCAGATAGAATGCTTGATATGGGTTTTGAACTACAGATACGAGAGATAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCCACTATGCCTGTGGAGATTGAAGCATTATCAAAGGAATACTTGGCTAATCCTGTACAAGTGAAAGTTGGAAAAGTCAGTAGCCCAACAACAAATGTTTCACAAACACTTGTGAAGGTCTCTGAAAATGAGAAGATTGATCGACTTCTAGATTTGCTTGTAGAAGAGGCGTCACAGGCTGAAAAATGTGGTCATCCATTTCCACTAACAATAGTGTTTGTTGAAAGAAAGACGAGATGTGATGAAATTGCTGAAGCACTTGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAAAGTGAAAGAGAGGCTGCCCTGCATGACTTTCGGAGTAGCACCACCAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCGCATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACATCGGATTGGAAGGACAGGGCGTGCAGGAACAACAGGCCTATCGACTTCATTCTACACTGATCGTGACATGTTCCTCGTTGCAAATATAAGGAAAGCAATTGCTGATGCTGAATCTGGGAACACAGTGGCATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACACTTTGGATTGGGACCTGCTTCAATTAACATCGAAGATAAATATAGATTTATGATTACTACCTCAAACATTAAAAAGGTAGGCGCAGCTGATAGTGCTTGGGATGATTAG 1773 0.4467 MSYVPPHLRNSTTTTTTTTTTTTTAKTSSVTQENNNDNISNNVNHQTKLAFPSYSNSHSHSHSNGTNGTNGNANNHNSVSHGSRRPTATPQPSRIFAAPEPVFPHWQPSERVSRMSPDQIEEVRLRLNLDVTIASDSPAAPAPIESFSDMCVHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCMAQSPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFELQIREIMRNLPEKHQTLLFSATMPVEIEALSKEYLANPVQVKVGKVSSPTTNVSQTLVKVSENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQSEREAALHDFRSSTTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGTTGLSTSFYTDRDMFLVANIRKAIADAESGNTVAFATGKVARRKEKEAAAAQKEANIALSKHFGLGPASINIEDKYRFMITTSNIKKVGAADSAWDD 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00237 590 Gene3D - 358 552 IPR027417 -
Aip01g00237 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 513 IPR027417 -
Aip01g00237 590 Gene3D - 105 356 IPR027417 -
Aip01g00237 590 CDD SF2_C_DEAD 364 502 - -
Aip01g00237 590 Coils Coil 231 251 - -
Aip01g00237 590 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 58 555 - -
Aip01g00237 590 SMART helicmild6 412 493 IPR001650 -
Aip01g00237 590 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 376 534 IPR001650 -
Aip01g00237 590 Coils Coil 534 554 - -
Aip01g00237 590 MobiDBLite consensus disorder prediction 1 95 - -
Aip01g00237 590 SMART ultradead3 164 367 IPR014001 -
Aip01g00237 590 MobiDBLite consensus disorder prediction 1 90 - -
Aip01g00237 590 CDD DEADc 156 353 - -
Aip01g00237 590 Pfam DEAD/DEAH box helicase 169 339 IPR011545 GO:0003676|GO:0005524
Aip01g00237 590 Pfam Helicase conserved C-terminal domain 376 493 IPR001650 -
Aip01g00237 590 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Aip01g00237 590 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 352 IPR014001 -
Aip01g00237 590 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 298 306 IPR000629 -
Aip01g00237 590 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 58 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00237 Aip-Chr1 2435911 2444387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00237 145 515 Eukaryotic Initiation Factors Gene Family AT1G72730 34.667 4.76e-68 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00237 K12823 - gmx:100787545 904.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00237 01 2435911 2444387 Aip01g00237 01 2435911 2444387 ECH