Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00235 ATGCATTCAACTCCAATTTTGCATCAGCATCAACCGACCTTCGTCACTGATTCTATTTCTCATAACACTGCAAGCTCAATTTCTAATGCACAAACCTCATCCTTGTCTCATTCACATACTCACATGGACACTTATGCATCAGCTCACCCTGCACCTCTTAGGAAGTTTAGTAGGACTAGGCAAGCACCAAGAGACAGAGAGAGAAAGAGAGAAACGATAACCGCAAACCAAAGAGGTCTCACTCTTCCGCTCACATTTCTCAAATTCATACTCATACTCATTCTCGCAGTAACCATGGCTGATGAACCACAAAATGATATGAAGGAGGAGGTTGCAGAGATTACCCCATTTGATCCTAATAAGAAGAAGAAGAAAAAGAAAACCACAATCATAGATCCTGCAGATGATCTGGACAAGTTGGCTGAGAAGACTGAAAATTTAACAGTGGCTGAAGGGGTTGAGAGTACATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCTGTTGAAATCAGCAACTTAAATGAAGAGGTTGGAGATGCAGTTGAAGATTTGGATGATGTTGCTGAACAAGATGAAGGAGACCCAATTTCCTTGCAGCCTCGTTATCCTTGGGAAGGGAGTGACCGTGATTATCAATATGAGGAGCTTCTTGGCAGGGTGTTCAACATTCTACGCGAGAATAATCCGGAACTTGCTGGAGACAGGCGGAGAACTGTTATGAGACCTCCACAGGTTCTTCGTGAGGGGACAAAGAAAACTGTGTTCGTGAATTTTATGGACCTATGCAAAACGATGCATCGACAGCCAGACCATGTTATGGCTTTCTTGCTTGCTGAACTGGGTACAAGTGGCTCTTTGGATGGACAGCAAAGACTGGTTGTGAAGGGAAGATTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATATCAATGAATATGTCATTTGCCTTGGGTGTAAAAGTCCTGACACAATACTTTCTAAGGAGAATCGTCTGTTCTTCCTTCGATGTGAGAAGTGTGGATCCGGAAGATCAGTTGCTCCGATCAAGGCTGGTTTCGTGGCTCGTGTTGGCCGTAGGAATGCGGGCACATGA 1098 0.4381 MHSTPILHQHQPTFVTDSISHNTASSISNAQTSSLSHSHTHMDTYASAHPAPLRKFSRTRQAPRDRERKRETITANQRGLTLPLTFLKFILILILAVTMADEPQNDMKEEVAEITPFDPNKKKKKKKTTIIDPADDLDKLAEKTENLTVAEGVESTFAGLKKKKKKPVEISNLNEEVGDAVEDLDDVAEQDEGDPISLQPRYPWEGSDRDYQYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYINEYVICLGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNAGT 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00235 365 Coils Coil 170 190 - -
Aip01g00235 365 Pfam Domain found in IF2B/IF5 235 343 IPR002735 GO:0003743|GO:0006413
Aip01g00235 365 Gene3D - 208 350 - -
Aip01g00235 365 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 99 365 IPR045196 GO:0003743|GO:0006413
Aip01g00235 365 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 210 317 IPR016189 GO:0003743|GO:0006413
Aip01g00235 365 SMART eIF2Bneu4 235 344 IPR002735 GO:0003743|GO:0006413
Aip01g00235 365 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT 99 365 - -
Aip01g00235 365 MobiDBLite consensus disorder prediction 45 72 - -
Aip01g00235 365 MobiDBLite consensus disorder prediction 58 72 - -
Aip01g00235 365 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 314 349 IPR016190 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00235 Aip-Chr1 2419104 2426194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00235 99 361 Eukaryotic Initiation Factors Gene Family AT5G20920 77.154 8.03e-138 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00235 K03238 - gmx:100783618 468.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00235 01 2419104 2426194 Aip01g00235 01 2419104 2426194 ECH