Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00233 ATGTCCGCACAATCCACCCTGAAGCTTCAGACTCTCGCCATAAGAAGCTCAAGCTTCGATTTTGAAGGCGACCCACCATGCAAAACAGCAAAAAGGCTTCGATCGAAGAAGCTCCTTCGAATCATACTCACCGATCCCGACGCCACCGATTCAGAATCTTCCAACGATGAAGCAGAAGAGCAAAACCCATCACCGAGGGTAAAAAGGGAAATTATCACTCACATAATGACCCCTCGGCTTCACTCTTCGCATTCTTCTTCTCCAACCGCATCTTCATCACCTTCTTCTCCTTCAATCGGTTCGGGTCAAAACCATGTTGACCGGAACCGGTTCAAGAGGAAAATAAAACGCACCATTTCTGGTTCTGGAAGGTTCCGTGGCGTTCGTCAGAGACCGTGGGGGCGGTGGACGGCAGAGATTCGTGACCCGAACCGAAGAAAACGGGTTTGGTTGGGCACTTTTGACACCGCGGAGGAGGCTGCCGCTGTTTACGACGCCGCGGCAGTTAAGTTCAAGGGTCCCGGCGCAGCTATTAACTTTCCCCGTGGCGATTCGGAAGTTTCCGGCGAGAGTTTTGCGGTGGTTTCCGGTGAGGGTTTTGTGGCGGTTTCTGGGAGCAGAGAGGGTTTTGCCTCTCCGACTTCGGTCCTTGCTTACGATGACGGCGTTGTTGGTGGTTGCGAGACGACGCCGTTTGAGGGTCTCCGTTACGGCGATGTGGATGCTTTCGGTTTTGACATTGACGTGCCGTTAAGTTTGATGGGCGTTAACTCGGTATTGACTCAGCGCTTTGGGAAGGAAGAGTTCGGCGAGTTAGACCCGGAAGATTTCCTGACGTGGCCTGAATAG 849 0.5277 MSAQSTLKLQTLAIRSSSFDFEGDPPCKTAKRLRSKKLLRIILTDPDATDSESSNDEAEEQNPSPRVKREIITHIMTPRLHSSHSSSPTASSSPSSPSIGSGQNHVDRNRFKRKIKRTISGSGRFRGVRQRPWGRWTAEIRDPNRRKRVWLGTFDTAEEAAAVYDAAAVKFKGPGAAINFPRGDSEVSGESFAVVSGEGFVAVSGSREGFASPTSVLAYDDGVVGGCETTPFEGLRYGDVDAFGFDIDVPLSLMGVNSVLTQRFGKEEFGELDPEDFLTWPE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00233 282 ProSiteProfiles AP2/ERF domain profile. 124 181 IPR001471 GO:0003700|GO:0006355
Aip01g00233 282 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 32 221 - -
Aip01g00233 282 CDD AP2 124 181 IPR001471 GO:0003700|GO:0006355
Aip01g00233 282 PIRSF PTI6 7 282 IPR017392 GO:0003700
Aip01g00233 282 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Aip01g00233 282 PRINTS Ethylene responsive element binding protein signature 147 163 IPR001471 GO:0003700|GO:0006355
Aip01g00233 282 MobiDBLite consensus disorder prediction 78 105 - -
Aip01g00233 282 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 221 - -
Aip01g00233 282 MobiDBLite consensus disorder prediction 59 75 - -
Aip01g00233 282 SMART rav1_2 124 187 IPR001471 GO:0003700|GO:0006355
Aip01g00233 282 MobiDBLite consensus disorder prediction 44 113 - -
Aip01g00233 282 Pfam AP2 domain 124 173 IPR001471 GO:0003700|GO:0006355
Aip01g00233 282 SUPERFAMILY DNA-binding domain 124 181 IPR016177 GO:0003677
Aip01g00233 282 Gene3D AP2/ERF domain 123 182 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00233 Aip-Chr1 2369136 2370785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00233 35 223 AP2-EREBP Transcription Factor Family AT4G27950 44.279 5.99e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip01g00233 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00233 K13434 - gmx:102660028 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00233 01 2369136 2370785 Aip01g00233 01 2369136 2370785 ECH
Aip01g00233 01 2369136 2370785 Aip07g01236 07 19113929 19115408 PCT