Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00226 ATGGGGAGAAGACCAGCGAGGTGTTACAGGCAAATCAAGAACAAGCCATATCCAAAATCGCGATTCTGCAGGGGTGTGCCTGACCCTAAGATCCGAATCTATGACGTCGGAATGAAGAAGAAGGGTGCGGATGAGTTTCCGTTCTGCGTGCACCTTGTTTCATGGGAGAAGGAGAATGTTTCCAGTGAGGCACTTGAGGCTGCTCGCATTGCTTGCAACAAGTACATGTCCAAATTCGCAGGCAAAGACGCTTTCCATTTGCGTGTTAGGGTTCATCCTTTCCATGTTCTCCGTATCAACAAGATGCTCTCCTGCGCCGGCGCCGACAGGCTCCAGACTGGCATGAGGGGCGCCTTTGGCAAGCCGCAGGGCACTTGCGCTAGGGTGAACATTGGCCAGGTACTTCTCTCGGTTCGCACCAAGGATAACCATGAGTATTTGAAGTTAAAGTCTGAGAACAGAATTGTGCCTGATGGTGTCAATGCCAAGCTTCTTGGGTGCCATGGACCTTTGGCAAATCGTAAACCTGGACAAGCTATCTTGCCAGCTACTGCTAGTGCTTAG 564 0.5106 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGADEFPFCVHLVSWEKENVSSEALEAARIACNKYMSKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRTKDNHEYLKLKSENRIVPDGVNAKLLGCHGPLANRKPGQAILPATASA 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00226 187 SUPERFAMILY Ribosomal protein L16p/L10e 4 147 IPR036920 GO:0003735|GO:0005840|GO:0006412
Aip01g00226 187 Gene3D Ribosomal protein L10e/L16 1 144 IPR036920 GO:0003735|GO:0005840|GO:0006412
Aip01g00226 187 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Aip01g00226 187 PANTHER 60S RIBOSOMAL PROTEIN L10 1 143 IPR001197 GO:0003735|GO:0005840|GO:0006412
Aip01g00226 187 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 144 184 - -
Aip01g00226 187 Pfam Ribosomal protein L16p/L10e 12 143 IPR016180 GO:0003735|GO:0005840|GO:0006412
Aip01g00226 187 Gene3D - 145 179 - -
Aip01g00226 187 PANTHER 60S RIBOSOMAL PROTEIN L10 144 184 IPR001197 GO:0003735|GO:0005840|GO:0006412
Aip01g00226 187 CDD Ribosomal_L16_L10e 41 148 IPR016180 GO:0003735|GO:0005840|GO:0006412
Aip01g00226 187 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00226 Aip-Chr1 2273460 2275714 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00226 1 186 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 72.398 4.06e-113 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00226 K02866 - gmx:100779884 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00226 01 2273460 2275714 Aip01g00226 01 2273460 2275714 ECH