Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00224 ATGATTACTTTCAAGAGTAAGCAAGAAAATGTAGAGAGACACCCCTTTAAGCCTTTGCTTTTACTACTGAGCCTACACAAACAAGAGCCCTTTGTAGAATTCATGTCTGGCTTGTATAATCAGATTTCCTCACCTGCTTCTCAAAGGGCTAATTCACCAAACATAAACATGAGAAGCAATTTTGATGTTGATAGTCACTACTTAACTGAGCTGCTACAAGAACACCAGAAGCTTGGTCCTTTCATGCAAGTTTTACCCTTGTGTAGCAGACTCCTCAATCAAGAGATTTTAAGGGTTTCTGGGAAGAATGGAATGTTGCAGAACCAAGTAGGATTTAGTGACTTTGACAGAATGCAATATGTAAGCCCGAGTCATATGGTTTCGTCGGATATAACACCGAACTTCACTGGCTGGAACAGCTTGTCACATGATAGGCTAAGTGGAGTACAAGGCCTAAATGTGGATTGGCAAACATCACCACAAGCAGTTCCGAATTCTCACATTGTGAAGAAGATTTTGCGCTTGGATATTCCGAAGGAAGGCTATCCAAATTTTAATTTCGTCGGCCGGCTTCTTGGCCCAAGGGGTAATTCGCTCAAGCGAGTCGAGGCAACAACCGGTTGCCGTGTGTTTATCAGAGGGAAAGGTTCAATTAAGGACCTAGACAAGGAAGAGTTGTTAAGAGGAAGGCCAGGGTATGAACACCTGAATGATCCACTACACATTTTGATTGAAGCTGAACTACCAGCAAGTGTTGTTGATGTAAGGTTGAGGCAAGCACAGGAAATCATACAAGAGCTACTTAAACCAGTGGATGAGTCACAAGACTTCTACAAAAGACAACAGCTAAGGGAACTTGCAATGCTGAATTCCAATTTCAGAGAAGAGAGCCCTCAATTGAGTGTCACCAGAGAAGGAAAGAAAGAAGAGAACTCAGAACCGAAACGCTCCGTACAAGAGAAGAGTAATTCGATCAAAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGAAGATGGGGAAGGGATTCGTTCCGATGAAGGCGGTGACCTACGGCCTCTCACCTTTCCACCAGAAGATCATGCCTGGTCTATGGAAGGACCTGCCTACCAAGATCCACCATAAGGTCTCCGAGAACTGGATCAGCGCCACCCTCCTCCTCGGTCCCCTCGTCGGAGTCTACTCGTATGTTCAGAACTACCAGGAAAAGGAGAAGTTGTCCCACAGATATTGA 1242 0.4428 MITFKSKQENVERHPFKPLLLLLSLHKQEPFVEFMSGLYNQISSPASQRANSPNINMRSNFDVDSHYLTELLQEHQKLGPFMQVLPLCSRLLNQEILRVSGKNGMLQNQVGFSDFDRMQYVSPSHMVSSDITPNFTGWNSLSHDRLSGVQGLNVDWQTSPQAVPNSHIVKKILRLDIPKEGYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDLDKEELLRGRPGYEHLNDPLHILIEAELPASVVDVRLRQAQEIIQELLKPVDESQDFYKRQQLRELAMLNSNFREESPQLSVTREGKKEENSEPKRSVQEKSNSIKGGRRRRRRRRRRRKKMGKGFVPMKAVTYGLSPFHQKIMPGLWKDLPTKIHHKVSENWISATLLLGPLVGVYSYVQNYQEKEKLSHRY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00224 413 PANTHER RNA-BINDING KH DOMAIN PROTEIN 36 302 - -
Aip01g00224 413 MobiDBLite consensus disorder prediction 300 325 - -
Aip01g00224 413 MobiDBLite consensus disorder prediction 295 344 - -
Aip01g00224 413 Gene3D - 346 413 IPR036642 GO:0005750|GO:0006122
Aip01g00224 413 SMART kh_6 169 269 IPR004087 GO:0003676
Aip01g00224 413 CDD SF1_like-KH 174 294 - -
Aip01g00224 413 Pfam Cytochrome b-c1 complex subunit 8 342 413 IPR020101 GO:0005750|GO:0070469
Aip01g00224 413 PANTHER RNA-BINDING PROTEIN RELATED 36 302 IPR045071 -
Aip01g00224 413 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 175 294 IPR036612 GO:0003723
Aip01g00224 413 Gene3D K Homology domain, type 1 58 303 IPR036612 GO:0003723
Aip01g00224 413 MobiDBLite consensus disorder prediction 326 344 - -
Aip01g00224 413 Pfam Homodimerisation region of STAR domain protein 64 102 IPR032377 -
Aip01g00224 413 Pfam KH domain 186 218 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00224 Aip-Chr1 2251351 2262165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00224 342 413 Chloroplast and Mitochondria Gene Families AT5G05370 69.444 2.10e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00224 K14945 - gmx:100815901 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00224 01 2251351 2262165 Aip01g00224 01 2251351 2262165 ECH
Aip01g00224 01 2251351 2262165 Aip07g01224 07 18728724 18733968 PCT