Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00188 CGCAACTGTTCCGATGGTAGTAATGGCGCCAGAGTCACCTTTGACGGATGTTTTCTAAGATATGACAGTGATATGTTCTACGACAAGACCACAGAACCTGGGAACGATGGTGTATTATGTGGGAGCATGCCAACATCGGAAACAGCTACTACTTTTGGTGCAACTGTAACTCAGGCTCTGAAGAATCTCCAATTAGCAACACCAAGAATCAAAGGCTTCTTTGCTGCCACTAAAACACTAGTAGCTAGTGGCGGCGGTTCGGTGTATGCTGTCGCGCAATGTGTTGAAACCGCCACTGAAAGCTCTTGCTTGGATTGCTTGACTTTTGGATTTGTTAACTTGAAGAGTAATTGCATTCCCAACATTGATGGTAGGGCTTATAATGCAGGGTGCTTTATGAGATATTCAAATTTACCCTTCTTTTCTGATAACCAAACCATTGACATCACTCCCTATTTAAAACAAGGAGGTTCAAGCAATAAATGGGGCATTATTGGTGGTGTTGGGGGAGGCATTGCTCTTTTTGTGATCATCTCCATTGCATTATTTGTCTGGTATAAACGATCCAACAACAAAAAGGAAGAGGTTCATAGAGGTGATATATTGGGGGCAACTGAATTGAAAGGTCCAATTAATTACAGCTATAATGATTTGAAAGCTGCAACAGAAAATTTCAGTGAAAATAATAAACTTGGAGAAGGAGGCTTTGGCGATGTATACAAGGGAATTCTGGAAAATGGAAAAGTTGTGGCAGTCAAGAAATTGATTCTAAGCCAATCCAAGAAGATGAAGGATGATTTTGAAACTGAAGTAAAACTTATAAGCAATGTGCATCATCGAAACCTTCTTAGACTTCTTGGATGTTGCAATAAAGGCCAAGAGAGAATCCTTGTTTATGAGTATATGGCAAATAAGAGCCTTGATAAATTCTTATTTGGTGACAAAAAAGGTTTCCTTAATTGGAGGCAACGTTTCGATATAATTATAGGTACAGCTAGGGGCTTGACATACTTACACGAAGAATTTCATGTTTCTATTATACATCGAGATATAAAAACTAGTAATATTCTTTTGGACGATGAATTTCAACCCAAAATTGCTGATTTCGGATTAGCCAGACTTTTACCTAGAGATCAATCTCATCTTAGCACAAGATTTGCTGGAACAATGGGATACACTGCACCTGAATATGCTATTCATGGTCAATTATCAGAAAAAACCGATGTTTATAGCTATGGAATTGTGGTTCTAGAAATTATAAGTGGTAAAAAATGTACCGAAGTGAAGATTGGTATTGACAATGGCCAAGaataccttcttcaacaaGCATGGAAACTATATGAACAAGGCAGGCACATTGAGTTAGTGGATGAAAGCATAAACCCTAATGAGTATGATAAAGAAGAAGTAAAGAAAATAATAGAAATTGCTTTGTTGTGCACTCAAGCATCAGCCACAATGAGACCAGCAATGTCTAAAGTAGTAATCTTACTTAAACTGAAAAAAAAAAAAAAAGTAAAGATGTTGCAACTTAAGGTAGTGGCCATAACCCTAATATGGTGGTGGTGGACATGGCATCTTCACGGTGCAGTTGTTGTTGCAGATCCTCAAGTGAATCTAATAAACCAAGGGTGCAGTTCATACAACGAAACCAACTTGAGAAGCTTCTTTGCCAACATCAATGGAACGTTTTCGGAGCTTAGAAGTGATATAGTGAATCAAAGCAAGCACTTTGGAACTGCACAAGAAGCGAGGGGAGAGGTTATCACATACACAATGTTTCAGTGCAGAAACTATCTTTCCCAAAGGGATTGTCTTAGTTGCTTCAACAACGCTACCATTCAAATTCGGAATTGTTCAAATGGTAATGGTGCCAGAGTCATCTATGATGGTTGCTTCCTCAGGTATGAGAGCAATATCTTCTTCAGCCAAACAACTGAACCTGGGAATGGTGTAAAATGTGGGAACAAAACAGGAAAAGGAGGCAATGATTTTGGTTCAGCTGGAAAAGAAGCTCTAATGAATCTCCAAACAGCAACACCAAAAATCAAAGGATTTTATGCTGCCACAAAGACACAATTGCCTAATAATAATAATGGTGGTGCAATCTATGCTGTTGCACAGTGTGTTGAAACTGCCACTCAAAGTGATTGTTTGGCATGCATGAATGTTGGATACAACAATTTGCAAACATGTCTTCCTAATTCTGATGGTAGGGCTTATGATGCTGGTTGTTTTATGAGATATTCACAGACTCCTTTTTTTGCTGATAATCAAACCATTGATATCACTCCATACTTGACACAAGGAGGTTCAAGCAAGAAGTGGGCCATTATAGGTGGTGTTGGTGGAGGTGTAGTTCTTGTTGTGATCCTTCTTGCATTATTTGCATGGTATAGACATTCCAAAAAACCCAAAAGGGTTCCTAGAGGGGATATATTGGGAGCAACCGAGTTGAAAGGTCCAGTTAATTACAAGTATAATGATTTGAAAGCTGCAACAAAAAATTTCAGTGAAGAAAATAAATTAGGAGAAGGAGGTTTTGGTAATCAGGGTACTCTTAAAAATGGGAAAGTTGTTGCAGTGAAGAAATTGATTTTGGGGCAAACTGACAAAATGGAAGATCATTTTGAGAGTGAAGTAAAGCTGATTAGTAATGTGCACCATAGGAATCTGGTGAGGCTTCTTGGTTGTTGTAGTAAAGGCCAAGAGAGAATCCTTGTTTATGAATACATGGCAAATAGTAGCCTTGACAGATTCTTATTTGGTAACAAGAAAGGCTCCCTGAATTGGAGACAACGTTGTGACATAATTTTAGGGACAGCAAGGGGATTGGCCTATCTTCATGAGGAATTCCATGTTTCTATTATTCACAGAGATATAAAGAGTGGAAATATTCTATTGGATGATGATCTTCAACCTAAAATTGCTGATTTTGGTTTGGCTAGACTTCTTCCAGGGGATCAATCTCATCTTAGCACAAGATTTGCAGGAACATTAGGATACACAGCACCTGAATATGCAATTCATGGCCAATTATCAGAAAAAGCAGACACTTATAGTTATGGCATTGTAGTCCTAGAAATTATAAGTGGTCCAAAGAGTACTGAAATGAAGGTTGATGATAATGGACATGAATATCTTCTTCAACGAGCATGGAAACTGCATGAGGAAGGAATGCACATGGAGTTAGTGGACAAAAGCATAGAAGCTAGTGAATATGAAACAGGGGAAGTGAAGAAAATAATGGAAATTGCATTGATGTGCACTCAAGCATCAGCATCAATGAGGCCAACAATGTCTGAAGTAGTTATGTTACTAAAAAGCAAAGGCTTATTTGAGAATATGCAACCTTCAATGCCGGTGTTTGTTGAGTCAAATATGAAAGCCAGAGGAGATATTTCTGCTTCAACCGGTGGTTCCTCTACAACCACTTCCAATGCTACTGTCTCCACTTCTATAGTATCAGCAAGATGA 3477 0.3837 RNCSDGSNGARVTFDGCFLRYDSDMFYDKTTEPGNDGVLCGSMPTSETATTFGATVTQALKNLQLATPRIKGFFAATKTLVASGGGSVYAVAQCVETATESSCLDCLTFGFVNLKSNCIPNIDGRAYNAGCFMRYSNLPFFSDNQTIDITPYLKQGGSSNKWGIIGGVGGGIALFVIISIALFVWYKRSNNKKEEVHRGDILGATELKGPINYSYNDLKAATENFSENNKLGEGGFGDVYKGILENGKVVAVKKLILSQSKKMKDDFETEVKLISNVHHRNLLRLLGCCNKGQERILVYEYMANKSLDKFLFGDKKGFLNWRQRFDIIIGTARGLTYLHEEFHVSIIHRDIKTSNILLDDEFQPKIADFGLARLLPRDQSHLSTRFAGTMGYTAPEYAIHGQLSEKTDVYSYGIVVLEIISGKKCTEVKIGIDNGQEYLLQQAWKLYEQGRHIELVDESINPNEYDKEEVKKIIEIALLCTQASATMRPAMSKVVILLKLKKKKKVKMLQLKVVAITLIWWWWTWHLHGAVVVADPQVNLINQGCSSYNETNLRSFFANINGTFSELRSDIVNQSKHFGTAQEARGEVITYTMFQCRNYLSQRDCLSCFNNATIQIRNCSNGNGARVIYDGCFLRYESNIFFSQTTEPGNGVKCGNKTGKGGNDFGSAGKEALMNLQTATPKIKGFYAATKTQLPNNNNGGAIYAVAQCVETATQSDCLACMNVGYNNLQTCLPNSDGRAYDAGCFMRYSQTPFFADNQTIDITPYLTQGGSSKKWAIIGGVGGGVVLVVILLALFAWYRHSKKPKRVPRGDILGATELKGPVNYKYNDLKAATKNFSEENKLGEGGFGNQGTLKNGKVVAVKKLILGQTDKMEDHFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDRFLFGNKKGSLNWRQRCDIILGTARGLAYLHEEFHVSIIHRDIKSGNILLDDDLQPKIADFGLARLLPGDQSHLSTRFAGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIISGPKSTEMKVDDNGHEYLLQRAWKLHEEGMHMELVDKSIEASEYETGEVKKIMEIALMCTQASASMRPTMSEVVMLLKSKGLFENMQPSMPVFVESNMKARGDISASTGGSSTTTSNATVSTSIVSAR 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00188 1158 MobiDBLite consensus disorder prediction 1134 1158 - -
Aip01g00188 1158 Gene3D Transferase(Phosphotransferase) domain 1 912 1118 - -
Aip01g00188 1158 Gene3D Transferase(Phosphotransferase) domain 1 302 516 - -
Aip01g00188 1158 ProSitePatterns Serine/Threonine protein kinases active-site signature. 346 358 IPR008271 GO:0004672|GO:0006468
Aip01g00188 1158 Pfam Salt stress response/antifungal 660 751 IPR002902 -
Aip01g00188 1158 Pfam Salt stress response/antifungal 45 137 IPR002902 -
Aip01g00188 1158 Pfam Salt stress response/antifungal 545 638 IPR002902 -
Aip01g00188 1158 Gene3D - 651 754 IPR038408 -
Aip01g00188 1158 Gene3D - 537 641 IPR038408 -
Aip01g00188 1158 Gene3D - 38 140 IPR038408 -
Aip01g00188 1158 CDD STKc_IRAK 843 1108 - -
Aip01g00188 1158 ProSiteProfiles Gnk2-homologous domain profile. 34 140 IPR002902 -
Aip01g00188 1158 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 511 - -
Aip01g00188 1158 ProSitePatterns Serine/Threonine protein kinases active-site signature. 956 968 IPR008271 GO:0004672|GO:0006468
Aip01g00188 1158 ProSiteProfiles Gnk2-homologous domain profile. 538 641 IPR002902 -
Aip01g00188 1158 SUPERFAMILY Protein kinase-like (PK-like) 825 1129 IPR011009 -
Aip01g00188 1158 CDD STKc_IRAK 231 492 - -
Aip01g00188 1158 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 511 - -
Aip01g00188 1158 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 530 1153 - -
Aip01g00188 1158 Pfam Protein kinase domain 226 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00188 1158 SUPERFAMILY Protein kinase-like (PK-like) 208 498 IPR011009 -
Aip01g00188 1158 ProSiteProfiles Protein kinase domain profile. 837 1123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00188 1158 ProSitePatterns Protein kinases ATP-binding region signature. 231 254 IPR017441 GO:0005524
Aip01g00188 1158 Gene3D Phosphorylase Kinase; domain 1 200 301 - -
Aip01g00188 1158 Gene3D Phosphorylase Kinase; domain 1 814 911 - -
Aip01g00188 1158 Pfam Protein tyrosine and serine/threonine kinase 840 1106 IPR001245 GO:0004672|GO:0006468
Aip01g00188 1158 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 530 1153 - -
Aip01g00188 1158 ProSiteProfiles Protein kinase domain profile. 225 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00188 1158 SMART serkin_6 837 1113 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00188 1158 SMART serkin_6 225 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00188 1158 ProSiteProfiles Gnk2-homologous domain profile. 647 754 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00188 Aip-Chr1 1889766 1912051 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00188 8 503 Receptor kinase-like Gene Family AT1G70520 40.157 1.11e-111 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip01g00188 PK_Tyr_Ser-Thr 2.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00188 - - vra:106775622 1509.58