Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00187 ATGTTCGAAGGAGCCCTAGGAGACCCTCAAATCAATTCACTAATCAAGGCTTGCGGAAAGCTGGGCCCAACCAGGTCGATCAACTTCAAGAAGATTCTAAATGCAACATTGGAAGACCTCAGAAACCAAAGCACAAGAAAGAACTACTTTGGCACTTCACATAATGTTATGGGAGATGACACTATATATGGCATGTTCCAATGTAGAAGATACCTTTCTAACACCGATTGCGCCGCCTGCGTCGCCGCTGCCACTGCAGATATCCTTAGTTGCTCCGGTGGGATTAGTTCCCATCTAGTATACGATGGGTGCTCCCTCAGATATGGACCATTCAGCTTCTTCACTGAGGCCATTCGTGGTGTCAATGGTGAAGTACCAGGAGCAACCAAGTTGAAAGCGCCAATTAACTATAAATACAATGATTTAAAAGCTGCAACAAACAATTTTAATGAAGAAAATAGACTAGGAGGAGGTGGCTTTGGCAATGTATACAAGGGAACTTTGAAAAATGGTAAAGTTATTGCGGTGAAGAAATTGTTCTCAGGTCAATCCAAGAAGTTGGAGGATGACTTTGAAAGTGAAGTGAAGTTTCTAAGTAATGTTCATCACCGAAACCTTGTTAGACTCCTTGGATTCTGCAATAAAGGCCAAGAGAGAATAATAGTTTATGAATACATGACAAATGGCAGTCTTGATAAATTGTTATTTGGTAAGGAAAAAGGTTGCCTAAATTGGAAGCAACGTTATGATATGGTTTTAGGCACAGCAAGGGGATTGGCCTATCTACATGAAGAGTTTTATGTTTCAATCATACATAGAGATATCAAAAGTGGCAACATCCTCTTAGACCATGAACTTCAGCCCAAAATTTCTGATTTTGGGTTGGCAAGGTTTCTTCCAAGTGACCAATCCAAACTCAATACAAGATTTGCAGGAACATTGGGATACACAGCACCTGAATATACAATTTACGGCCAATTATCAGAAAAAGTTGATACATACAGCTATGGTATTGTAGTTCTAGAAATTATAAGTGGTCAAAAGAGTACCGAAATAGTGAAAAATAATTATAATGATGATGACGACCATGAATATCTTATCAAACAAGCATGGAAACTTTATGAGCAAGGCAAGCACCTGGAGTTAGTGGATAAGAATTTAGACCCTAATGACTATGATGTGGAAGAAGTGAAGAGAGTTATAGAGATTGCTTTAATGTGCACTCAAGCATCACCATCAAAGAGGCCCAAAATGTCTCAAGTAGTAGTCTTACTCACAAGCAAGGCCCAACTTGAGAATTTGCAACCTTCAATGCCTGTATTTATTGAGTCAAACTTGAAATCTCAAGGAAGCAATTTTGGCTCAAATGCTACCGTCTCCTCTGATTCTATTTTATCAGCTAGATGA 1407 0.393 MFEGALGDPQINSLIKACGKLGPTRSINFKKILNATLEDLRNQSTRKNYFGTSHNVMGDDTIYGMFQCRRYLSNTDCAACVAAATADILSCSGGISSHLVYDGCSLRYGPFSFFTEAIRGVNGEVPGATKLKAPINYKYNDLKAATNNFNEENRLGGGGFGNVYKGTLKNGKVIAVKKLFSGQSKKLEDDFESEVKFLSNVHHRNLVRLLGFCNKGQERIIVYEYMTNGSLDKLLFGKEKGCLNWKQRYDMVLGTARGLAYLHEEFYVSIIHRDIKSGNILLDHELQPKISDFGLARFLPSDQSKLNTRFAGTLGYTAPEYTIYGQLSEKVDTYSYGIVVLEIISGQKSTEIVKNNYNDDDDHEYLIKQAWKLYEQGKHLELVDKNLDPNDYDVEEVKRVIEIALMCTQASPSKRPKMSQVVVLLTSKAQLENLQPSMPVFIESNLKSQGSNFGSNATVSSDSILSAR 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00187 468 Gene3D - 12 113 IPR038408 -
Aip01g00187 468 ProSitePatterns Protein kinases ATP-binding region signature. 155 178 IPR017441 GO:0005524
Aip01g00187 468 ProSiteProfiles Protein kinase domain profile. 149 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00187 468 Gene3D Phosphorylase Kinase; domain 1 122 225 - -
Aip01g00187 468 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 116 - -
Aip01g00187 468 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 119 462 - -
Aip01g00187 468 Pfam Salt stress response/antifungal 25 108 IPR002902 -
Aip01g00187 468 CDD STKc_IRAK 155 426 - -
Aip01g00187 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Aip01g00187 468 ProSiteProfiles Gnk2-homologous domain profile. 11 113 IPR002902 -
Aip01g00187 468 Pfam Protein kinase domain 149 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00187 468 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 5 116 - -
Aip01g00187 468 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 119 462 - -
Aip01g00187 468 Gene3D Transferase(Phosphotransferase) domain 1 226 440 - -
Aip01g00187 468 SUPERFAMILY Protein kinase-like (PK-like) 132 425 IPR011009 -
Aip01g00187 468 SMART serkin_6 149 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00187 Aip-Chr1 1861035 1872155 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00187 60 464 Receptor kinase-like Gene Family AT1G70520 39.140 1.41e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Aip01g00187 Pkinase 1.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00187 - - ahf:112723943 704.131