LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip01g00178	ATGACGATGACAATTGTACCCTCCCTTCACTTCTTGCTCCCTCAGAACCCAAAACCCTTCCAAATCCCTAATTTTATCCTGAAAACCCACTACGCCCCTTTTAATTTCAGACCCCAATTTTCCCGGGAAACAAACACCCCTCCTTCCCCCACCGACCGCGGACTCATTTTCCAGGAAAAAGTTCAGTACCTCAAGAATCTCAAAGTGAACCCACAGAAAGCCTTCCAAGTAAACCCTAACCTCCGATCCACACCACTTTCCACCGTCAAATCCGTCGAGCAATGCCTCTCTTCCATGGGAATCCACCGCTCCGCCATGGGAAGAATCCTCGATATGCTCCCGGAGCTTCTCAACCGAGACCCCGCCACGGACCTCTATCCGATCCTCGATTTCCTCCTCAACGACGTCGGAATCCCTTACCCCGACGTTCACAAATCGATCTCGCGGTGCCCTAGGCTCTTGATCTGCAGCGTGGAGGAGCAATTGAAGCCAACCCTAAAATTCCTGATGAAATTAGGGTTCACCGGTTCGAATTCCCTAACGTGCCAGAACACTGTGCTACTTGTTTCGAGCGTGGAGGGAACGCTCATTCCGAAGATCGAGTTCTTGAAAAGCTTGGGGCTTTCGGAATCAGAGGTTAATTGCATGGTTGTGAGGTCCCCTGCTTTGTTAACCTACAGTGTAGAGAAGAATTTGAAGCCTAAAGTTGAGTACTTTTTGAATGAGATGAATGGAAACGTTTCAGAGTTGAATCGGTTTCCGCAGTATTTTTCATTTAGCTTGGAAGGGAGGATTAAGCCAAGGCATAAGGTGTTGGTTGAGAATAGGGTGAAACTACCTTTGCATCTTATGTTGAAGGGTGATGATGGTGTTTTCTATGAGACACTGATTAATACCAGTATGAAGCATGGTTTCTCATCAAAATGGTGGTGGATGGAGAGTGGATCGGCATGGCTTCATCGGACATAA	969	0.4757	MTMTIVPSLHFLLPQNPKPFQIPNFILKTHYAPFNFRPQFSRETNTPPSPTDRGLIFQEKVQYLKNLKVNPQKAFQVNPNLRSTPLSTVKSVEQCLSSMGIHRSAMGRILDMLPELLNRDPATDLYPILDFLLNDVGIPYPDVHKSISRCPRLLICSVEEQLKPTLKFLMKLGFTGSNSLTCQNTVLLVSSVEGTLIPKIEFLKSLGLSESEVNCMVVRSPALLTYSVEKNLKPKVEYFLNEMNGNVSELNRFPQYFSFSLEGRIKPRHKVLVENRVKLPLHLMLKGDDGVFYETLINTSMKHGFSSKWWWMESGSAWLHRT	322

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip01g00178	322	PANTHER	TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC	41	302	-	-
	Aip01g00178	322	Gene3D	Transcription termination factor 3, mitochondrial	57	303	IPR038538	-
	Aip01g00178	322	PANTHER	CGI-12 PROTEIN-RELATED	41	302	IPR003690	GO:0003690\|GO:0006355
	Aip01g00178	322	SMART	mt_12	247	278	IPR003690	GO:0003690\|GO:0006355
	Aip01g00178	322	SMART	mt_12	214	246	IPR003690	GO:0003690\|GO:0006355
	Aip01g00178	322	SMART	mt_12	144	175	IPR003690	GO:0003690\|GO:0006355
	Aip01g00178	322	SMART	mt_12	178	209	IPR003690	GO:0003690\|GO:0006355
	Aip01g00178	322	SMART	mt_12	107	139	IPR003690	GO:0003690\|GO:0006355
	Aip01g00178	322	Pfam	mTERF	95	161	IPR003690	GO:0003690\|GO:0006355
	Aip01g00178	322	Pfam	mTERF	133	292	IPR003690	GO:0003690\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip01g00178	Aip-Chr1	1751459	1752591	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Aip01g00178		mTERF	1.5e-34	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip01g00178	K15032		-	vvi:100247222	338.191