Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00166 ATGGGAAGAGGGAAGATCGAGATAAAGCGAATCGAGAACACGACCAATCGGCAGGTGACGTTCTGTAAGAGGCGGAACGGTTTGCTGAAGAAAGCTTATGAACTGTCTGTGCTTTGTGATGCTGAAGTCGCTCTTGTTGTCTTCTCCAGCCGTGGCCGTTTGTATGAGTATGCTAACAACAGTGTTAGGGCAACAATTGAAAGTTCTCTAAACAATATTATGTACCAATATCAGTATTACCAGCAAGAATCAACCAAATTGAAAAGACAAATCCGAGAGATTCAAAATTTAAACAGGCACATCCTTGGTGAAGCACTCAGCACTCTAAGCCTTAAGGAACTAAAGAACCTTGAAAGCAGATTGGAGAAAGGCTTAAGCAGAGTCAGATCCAGAAAGCATGAAACATTGTTAGCTGAAGAACTATATGTGACACAATTGCATCTTCACAACAACCACCACCACCATTTGATCGCAACTTCTTTTAGGATCTGGTCACCAATATTGTTGTCTGATAGAGGGTGGTGGAAACCAATGGAAGTTCAAGCACAGCCTTCACATAATTTAATCTATCTGAAATATATATAG 585 0.4085 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIESSLNNIMYQYQYYQQESTKLKRQIREIQNLNRHILGEALSTLSLKELKNLESRLEKGLSRVRSRKHETLLAEELYVTQLHLHNNHHHHLIATSFRIWSPILLSDRGWWKPMEVQAQPSHNLIYLKYI 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00166 194 Pfam K-box region 76 139 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip01g00166 194 ProSiteProfiles K-box domain profile. 77 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aip01g00166 194 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 1 158 - -
Aip01g00166 194 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aip01g00166 194 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aip01g00166 194 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aip01g00166 194 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aip01g00166 194 Coils Coil 77 100 - -
Aip01g00166 194 PANTHER MADS BOX PROTEIN 1 158 - -
Aip01g00166 194 Coils Coil 111 131 - -
Aip01g00166 194 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aip01g00166 194 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Aip01g00166 194 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aip01g00166 194 CDD MADS_MEF2_like 2 67 IPR033896 GO:0000977|GO:0045944
Aip01g00166 194 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Aip01g00166 194 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00166 Aip-Chr1 1673814 1681119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00166 1 152 MADS-box Gene Family AT2G42830 70.482 1.34e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aip01g00166 K-box 5.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00166 K09264 - gmx:100817239 227.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip01g00166 01 1673814 1681119 Aip07g00423 07 3618367 3630548 PCT