Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00162 ATGGCTGCAAGCTTCGCTTCCAGGTGCTCTCGTGTGAGTCGTTCTCTGTTCGGTGGATTAAGCAACAACTCCCCTGGTTTATTTACCACATCACATGAGATGACATGCAGCAATTCCTTTTCTCAGCTGCAGCAACAGCGCACCTTCATACAAATGAGGACCGTTCTCAAGGTCGCAGACAATTCTGGGGCTAAAAAGGTCATGTGTATACAGGCTCTGAAAGGTAAGAAAGGGGCGAGATTAGGCGACACAATAGTAGCATCCGTGAAGGAAGCACATCCTAATGGAAAAGTGAAGAAAGGAAAAGTAGTATATGGTGTGGTTGTGCGTGCGGCAATGCAAAGGGGGCGATGCGACGGCAGTGAGGTCAAGTTTGACGACAATGCTGTGGTGCTCGTCGACAAGCAAGGCCAGCCTATTGGGACCAGAGTTTTTGGACCTGTCCCTCATGAGCTGAGGCAGAAGAAGCATGTCAAGATTCTTACCTTGGCAGGACATATTGCTTAA 507 0.4872 MAASFASRCSRVSRSLFGGLSNNSPGLFTTSHEMTCSNSFSQLQQQRTFIQMRTVLKVADNSGAKKVMCIQALKGKKGARLGDTIVASVKEAHPNGKVKKGKVVYGVVVRAAMQRGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00162 168 PANTHER 50S RIBOSOMAL PROTEIN HLP, MITOCHONDRIAL-LIKE ISOFORM X1 21 168 - -
Aip01g00162 168 TIGRFAM rplN_bact: ribosomal protein uL14 50 167 IPR005745 GO:0003735|GO:0006412|GO:0015934
Aip01g00162 168 Hamap 50S ribosomal protein L14 [rplN]. 49 168 IPR000218 GO:0003735|GO:0005840|GO:0006412
Aip01g00162 168 Pfam Ribosomal protein L14p/L23e 50 167 IPR000218 GO:0003735|GO:0005840|GO:0006412
Aip01g00162 168 ProSitePatterns Ribosomal protein L14 signature. 106 132 IPR019972 -
Aip01g00162 168 SUPERFAMILY Ribosomal protein L14 50 167 IPR036853 GO:0003735|GO:0005840|GO:0006412
Aip01g00162 168 SMART Ribosomal_L14_2 49 168 IPR000218 GO:0003735|GO:0005840|GO:0006412
Aip01g00162 168 Gene3D Ribosomal protein L14 49 168 IPR036853 GO:0003735|GO:0005840|GO:0006412
Aip01g00162 168 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 21 168 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00162 Aip-Chr1 1641808 1644200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00162 59 151 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 37.000 7.49e-10 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00162 K02874 - gmx:100818301 291.967