Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00154 ATGAACGACATTAACAACTACTCTTCCTTCGCCGCCGATTCAGGTTCTCTGGACTCAAATCATTCATGCTTGATGGTTGCGGTTGGAAGTGTCGGTGTTGAGTTTGCACCTTCGTCGTCTTCTTCATCATCATCATCTCTTACTCGGTGCCGTAAACCTAGAAAGAAGAGCGCTAAACTGATAAGCATAATGGAAGAAGAAGGAGTGAAAGGTAACAAGAACCGAGACTCGGAGGAGGCGCCGAAGATCACGCGTCCATGCACCCAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTCTATGGCCACATGCGGTGCCACCCTGAGCGGCCGTGGCGAGGCATAAATCCTCCTCGGAACCTCATCCCACCACCACTAGACACGAGCGGCGTCACAGTGGAGGATCAAGAGGTTGCCACGTGTCTCCTGCTGCTAGCGAACAGTGGGAGGGAGACGGTTAAAAATGATGAGTCTAATGAAGTGAAGATAGTGGAATGTGGAGATTCTTATCATTACAAAGAATTTGAGTGCTCCAGTTGCAAGAGAGTGTTTGGATCTCATCAAGCACTGGGAGGGCACAGAGCAAGTCACAAGAACGTCAAGGGCTGCTTTGCCATTACTCGGACCACCACCGAGGATCATCTACTAAACATTAACCTCCTCGCGCATGCTGACCACGGCGACGGCGACGGCGACGGCATCGCCAGCCACCAGTGTAGCATATGCCTCAGGGTGTTCCCCAGTGGCCAGGCTCTTGGTGGACACAAGAGGTGTCATTGGGAGAAAGCTGAGATTGATGAGACTGATGGGTCAACGTCAACACTACTCCCTGTTGACCTCAATTTGCCTGCTCCTATTGATCAACACTACTACCATTGCTCTTCTTCAACACTCACTCTGGATTTGAGGTTGGGTCTTTAA 921 0.5081 MNDINNYSSFAADSGSLDSNHSCLMVAVGSVGVEFAPSSSSSSSSSLTRCRKPRKKSAKLISIMEEEGVKGNKNRDSEEAPKITRPCTQCGKKFWSWKALYGHMRCHPERPWRGINPPRNLIPPPLDTSGVTVEDQEVATCLLLLANSGRETVKNDESNEVKIVECGDSYHYKEFECSSCKRVFGSHQALGGHRASHKNVKGCFAITRTTTEDHLLNINLLAHADHGDGDGDGIASHQCSICLRVFPSGQALGGHKRCHWEKAEIDETDGSTSTLLPVDLNLPAPIDQHYYHCSSSTLTLDLRLGL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00154 306 SUPERFAMILY beta-beta-alpha zinc fingers 86 197 IPR036236 -
Aip01g00154 306 MobiDBLite consensus disorder prediction 36 57 - -
Aip01g00154 306 SMART c2h2final6 237 259 IPR013087 -
Aip01g00154 306 SMART c2h2final6 175 197 IPR013087 -
Aip01g00154 306 SMART c2h2final6 85 107 IPR013087 -
Aip01g00154 306 Gene3D Classic Zinc Finger 34 114 - -
Aip01g00154 306 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 37 306 - -
Aip01g00154 306 Pfam C2H2-type zinc finger 86 109 - -
Aip01g00154 306 Pfam C2H2-type zinc finger 237 261 - -
Aip01g00154 306 Pfam C2H2-type zinc finger 175 198 - -
Aip01g00154 306 ProSitePatterns Zinc finger C2H2 type domain signature. 177 197 IPR013087 -
Aip01g00154 306 Gene3D Classic Zinc Finger 172 259 - -
Aip01g00154 306 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Aip01g00154 306 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 37 306 - -
Aip01g00154 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Aip01g00154 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 264 IPR013087 -
Aip01g00154 306 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
Aip01g00154 306 ProSiteProfiles Zinc finger C2H2 type domain profile. 175 202 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00154 Aip-Chr1 1561252 1562172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00154 80 306 C2H2 Transcription Factor Family AT4G35280 50.628 1.10e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip01g00154 zf-C2H2_6 5.8e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00154 - - aip:107643999 603.594