Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00141 ATGAGTTGCTTTGCATGGTGTAATACATCAGACCCAAGGATTAAGAGGTCATTAAGGAGAAGCATTGGGGATTACCATGGAGGAAAAACTCTTGCAGCATTTGCCAACATGTCTTTTAAAACTGATAGTGGCAAGAGAAAATTTATAGAGGAGATAGCAAGACTTGGAAAAGGGAATATTACCTCAAAAGCTTTTTCATTTAGAGAACTTTGTGCTGCAACTCAAAACTTTCACCCTTCCAATGTGATTGGTGAAGGAGGCTTTGGTAGGGTTTACAAAGGATACCTTAAAAGCACAGATCAAGTTGTTGCTGTGAAGCAACTTGACAGGAATGGATTTCAAGGGAATAGGGAATTTTTTGTTGAGGTTTTGGTTTTGAGTCTTTTGAAACACCCTAACCTTGTCAACTTGGTAGGTTATTGTGCTGAAGGTGAACAAAGGATTTTGGTGTATGAATACATGGTTAATGGTTCTTTAGAGGATCATTTACTTGACATCGATCCAGACAGAACACCATTGGATTGGCAAACTAGAATAAAAATTGCAGAAGGTGCAGCGAAAGGACTCGAATACTTGCACGAAATAGCAAATCCTCCGGTAATATACCGTGATTTTAAAGCATCAAATATTCTTTTAGACGAAAATTTCAATCCAAAACTATCTGATTTTGGACTCGCCAAAGTTGGTATACTTGGTGATGAAATGGCACAAGTATCCACAAGGGTCATGGGAACCTATGGCTATTGCGCACCCGAGTATGCATCCACAGGACAATTGACTATAAAATCAGATGTTTATAGTTTTGGAGTTGTGTTCTTGGAAATGATCACAGGAAGAAGAGTCATTGATAATTCGCGAAAAACAGAGGAAGCAAACTTAGTCCTTTGGGCACAACCACTTCTAAGAGACAGAAGAAAATTTGTACAAATAGCAGATCCATTGCTAGAAAATAAATACCCCATAAAGGGTTTGTACCAAGCTCTAGCAATAGCAGCAATGTGTCTTCAAGAGGAAGCTGAAACAAGGCCATGGATCAGTGATGTGGTTACTGCTCTTTCCTTTTTAGCAACCAAGAAGGTGGATGGAGACGCTTCCTTAAATGACAATTGTACTCAAGGTGGCGATTTTAGTGGAGACAACAACTCGAATGACGATGAAAATGGCGACGATGGTGATAATAATAAGAATAAAATCCAAGACGAAAACGGAGACAAAGATGAAGAGAAAGATATTAATAATAATAGTGACAATGACGACAACGATAATAATGACGATGTTAAAAGAAACAAAGAATAG 1296 0.3827 MSCFAWCNTSDPRIKRSLRRSIGDYHGGKTLAAFANMSFKTDSGKRKFIEEIARLGKGNITSKAFSFRELCAATQNFHPSNVIGEGGFGRVYKGYLKSTDQVVAVKQLDRNGFQGNREFFVEVLVLSLLKHPNLVNLVGYCAEGEQRILVYEYMVNGSLEDHLLDIDPDRTPLDWQTRIKIAEGAAKGLEYLHEIANPPVIYRDFKASNILLDENFNPKLSDFGLAKVGILGDEMAQVSTRVMGTYGYCAPEYASTGQLTIKSDVYSFGVVFLEMITGRRVIDNSRKTEEANLVLWAQPLLRDRRKFVQIADPLLENKYPIKGLYQALAIAAMCLQEEAETRPWISDVVTALSFLATKKVDGDASLNDNCTQGGDFSGDNNSNDDENGDDGDNNKNKIQDENGDKDEEKDINNNSDNDDNDNNDDVKRNKE 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00141 431 ProSiteProfiles Protein kinase domain profile. 77 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00141 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Aip01g00141 431 Gene3D Phosphorylase Kinase; domain 1 33 153 - -
Aip01g00141 431 PANTHER RECEPTOR SERINE/THREONINE KINASE 4 361 - -
Aip01g00141 431 CDD STKc_IRAK 83 352 - -
Aip01g00141 431 Pfam Protein kinase domain 78 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip01g00141 431 MobiDBLite consensus disorder prediction 366 431 - -
Aip01g00141 431 SUPERFAMILY Protein kinase-like (PK-like) 63 357 IPR011009 -
Aip01g00141 431 Gene3D Transferase(Phosphotransferase) domain 1 154 373 - -
Aip01g00141 431 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Aip01g00141 431 PANTHER OS07G0668900 PROTEIN 4 361 - -
Aip01g00141 431 MobiDBLite consensus disorder prediction 366 381 - -
Aip01g00141 431 MobiDBLite consensus disorder prediction 388 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00141 Aip-Chr1 1459141 1461660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00141 59 366 Glycoside Hydrolase AT3G07070 68.506 3.94e-153 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Aip01g00141 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00141 - - gmx:100790474 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00368 07 3225185 3227999 Aip01g00141 01 1459141 1461660 ECH
Aip01g00141 01 1459141 1461660 Aip01g00141 01 1459141 1461660 ECH
Aip01g00141 01 1459141 1461660 Aip07g00368 07 3225185 3227999 PCT