Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00131 ATGACGGATTACCGGTCGACGCCAACGATGAATCTCTGGAACGATGAAAACTCCTCCGTCATGGAAGCCTTCATGAGCTCCTCCGACCTCTCCTCTCTCTGGCTCCCTCCGCCACAATCCGCCGCCTCCACCTCCACCTCCGCAGCACCACCACCACCACAGCAACAACAACCACCTCCTCCACCGCCGTTCAACCAGGAAACCCTTCAGCACCGACTCCAAGCCCTAATCGAAGGCGCAAGAGAGAGCTGGACCTACGCAATCTTCTGGCAGTGCTCCTACGACTACTCCAATGGCCTCACACTCTTAGGTTGGGGCGACGGTTACTACAAAGGCGAAGAAGACAAAGGCAAAGCCATAAAAGCGACGTCGTTTGAGCAGCAGCAACACCGTAAGAAGGTCCTTAGAGAATTAAACTCTTTAATTTCAGGTCCTTCAGCTTCTGGCGACGAAGCGGTAGACGAAGAAGTAACCGACACCGAATGGTTCTTTCTTATATCCATGACTCAGCATTTCGTAAGCGGAACAGGCCTTCCTGGTCAGGCTTTCTTTAATTCGAATCCGGTTTGGGTTGCCGGTCCTGAACGGTTATTAGGCTCGGGCTGTGACCGGGCCCGGCAAGGTCAGTCGTTTGGGATACAGACCATAGTTTGTATACCTTCAGCAAACGGCGTGGTTGAGTTGGGTTCCACGGAACTCATTTATCAGAACCCGGATCTGATGAGTAAGGTGAAGGTGTTGTTCAATTTTAGTAACAGTAGTGGTGACGTGGCTGGATCCTGGCCCTTGAGTTCTGCAGATCAAGGAGAGAACGATCCTTCTTCGTTGTGGCTCAACGACCCTTCTTCTTCGGCTGGTGGGATCGAAATTCGAGATTCTGTTAATACGGCTGCGACTACGACGGTTGCCAACAACAAAACGGTGCCGGTTGTATCCAATCCTGGCTCCTCCAGCGTGGTAACTGAAGCTCCGAAGAATCCGCAACAGAATCAAGGGTTTGTGCTGAAGGAATTGAATTTCTCGAGCTCGTTAAAGCCGGAATCTGGCGAGATTCTGAGTTTTGGAGAGAATAAGAAGGGTTCTTATGGTGTAAACAGTAATAACGGTGGAAACAATTTGTTCTCTGTTCAGTCTCAGTCGCAGTTTGTCTCCGATGAGAACAAGAAGAGGAGATCCCCTACTTCTCGGAGCAGCATTGAGGATGGAATACTGTCTTTTACTTCCGGCGTGATCTTGCCGGCTTCGAATGCGAAGTCCGGTGGCGGCGGAGGCGGAGATTCGGATCATTCGGATTTGGAAGCTTCTGTGGTGAAGGAGGCCGTTGAGCCGGAGAAGAGGCCGCGAAAGAGAGGGAGGAAGCCGGCAAACGGAAGGGAGGAGCCGCTCAATCATGTGGAGGCAGAGAGGCAGAGAAGGGAGAAGCTCAATCAGAGGTTTTATGCTCTTCGAGCCGTGGTTCCCAATGTGTCGAAGATGGACAAGGCTTCGCTGTTGGGAGATGCTATCTCATACATCAACGAATTGAAATCGAAGCTACAAGGGCTGGAATCGGAGAAAGGCGAATTGAGCAAGCAATTGGAAGATTCCAAGAAGGAGCTGGAGCTGGCTAGTAAGAATTCAGGGGCTGCACAGGCCGCCCCACCGCCTCTTCCTGCGCCACCGGATAAGGAACAAAGGAGTCGTGCTGGAGTAAATGGGAAATTGATTGATTTGGAGATTGAGGTGAAGATTATTGGTTGGGACGCCATGATTAGGATCCAATGTAGCAAGAAGAACCACCCCGCAGCGAGGCTGATGGCGGCGCTGAAGGACCTGGACTTGGAAGTGCACCATGCCAGTGTGTCAGTGGTGAATGATTTGATGATTCAGCAGGCTACGGTGAACATGGGAAGCCGGTTTTACACACAGGAGCAGCTCATGTTAGCGCTATCATCCAAAGTTGGCGGCGGCGGAGATGCTAAGTAG 1965 0.5165 MTDYRSTPTMNLWNDENSSVMEAFMSSSDLSSLWLPPPQSAASTSTSAAPPPPQQQQPPPPPPFNQETLQHRLQALIEGARESWTYAIFWQCSYDYSNGLTLLGWGDGYYKGEEDKGKAIKATSFEQQQHRKKVLRELNSLISGPSASGDEAVDEEVTDTEWFFLISMTQHFVSGTGLPGQAFFNSNPVWVAGPERLLGSGCDRARQGQSFGIQTIVCIPSANGVVELGSTELIYQNPDLMSKVKVLFNFSNSSGDVAGSWPLSSADQGENDPSSLWLNDPSSSAGGIEIRDSVNTAATTTVANNKTVPVVSNPGSSSVVTEAPKNPQQNQGFVLKELNFSSSLKPESGEILSFGENKKGSYGVNSNNGGNNLFSVQSQSQFVSDENKKRRSPTSRSSIEDGILSFTSGVILPASNAKSGGGGGGDSDHSDLEASVVKEAVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLQGLESEKGELSKQLEDSKKELELASKNSGAAQAAPPPLPAPPDKEQRSRAGVNGKLIDLEIEVKIIGWDAMIRIQCSKKNHPAARLMAALKDLDLEVHHASVSVVNDLMIQQATVNMGSRFYTQEQLMLALSSKVGGGGDAK 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00131 654 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 69 248 IPR025610 -
Aip01g00131 654 MobiDBLite consensus disorder prediction 261 282 - -
Aip01g00131 654 MobiDBLite consensus disorder prediction 536 563 - -
Aip01g00131 654 MobiDBLite consensus disorder prediction 30 67 - -
Aip01g00131 654 SMART finulus 465 514 IPR011598 GO:0046983
Aip01g00131 654 CDD bHLH_AtAIB_like 456 532 - -
Aip01g00131 654 Gene3D - 451 539 IPR036638 GO:0046983
Aip01g00131 654 MobiDBLite consensus disorder prediction 30 50 - -
Aip01g00131 654 PANTHER MYC 11 647 IPR045084 GO:0003700|GO:0006355
Aip01g00131 654 MobiDBLite consensus disorder prediction 307 328 - -
Aip01g00131 654 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 462 527 IPR036638 GO:0046983
Aip01g00131 654 MobiDBLite consensus disorder prediction 437 469 - -
Aip01g00131 654 Pfam Helix-loop-helix DNA-binding domain 463 508 IPR011598 GO:0046983
Aip01g00131 654 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Aip01g00131 654 Coils Coil 505 539 - -
Aip01g00131 654 MobiDBLite consensus disorder prediction 379 400 - -
Aip01g00131 654 MobiDBLite consensus disorder prediction 51 66 - -
Aip01g00131 654 PANTHER TRANSCRIPTION FACTOR MYC2 11 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00131 Aip-Chr1 1356116 1358751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00131 1 648 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 56.166 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip01g00131 bHLH-MYC_N 7.2e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00131 K13422 - gmx:100790854 767.689