Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00111 ATGACACTGCAAAACAACACCCCAACAAGAACAAAGAAGCAACTCATCATTGATGATGATGATGCTAATGAACATTCTCCATTGCTACCAACAAAGAGAGATCATGATTATGATGATGGTGATGCTGATGGTGCATCCTTTGTTGGGTCAGTGTTCAATTTATCAACAACAATCATTGGTGCTGGAATCATGGCCTTACCAGCAGCAATCAAAGTGCTTGGTCTTCTCCTTGGCATTTCATCAATCATCTTCCTTGCATTCCTCACTGACACCTCTCTTGACATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAAAGCTTCATCCTATGCTCATGTCATGGGTTCTGCTTTTGGAAGACTTGGAACAATGGTGCTTCAGATATCTGTTTTCATCAATAATCTTGGGATACTTGTTGTCTATATGATCATAATTGGTGATGTGCTTTCTGGAACATCGTCAAGTGGAATTCACCATTTTGGTGTGCTTGAAGGATGGTTTGGTGAATGCTGGTGGACTGGCCGTTATTTCATTCTTCTTGTTACAACCCTTTTCATATTTGCTCCACTGGCATTTGTTAAGAGAATAGATTCATTGAGGTATTCTTCTGCTTTAGCGGTGGCTCTGGCGATCGTGTTTCTAGTCATAACTGCAGGAATCACACTGTTTAAATTGTTTAACGGCAGTATTGCTAGTCCGCGGTTACTTCCAAATGTTACTGATAGTGCATCTCTATGGAATCTCTTCACAGCAGTTCCAGTTCTTGTGACAGCATTTGTGTGCCATTACAATGTTCATACAATAGACAAGGAGCTAGGAGACTCCTCGTTGATACAACCGGTTGTGCGCGCATCACTCTCTCTGTGTTCCAGCATCTATATTCTTACAGCCTTATTCGGATTCCTCCTATTTGGTGAATCAACTCTGGATGATGTGCTAGCCAACTTTGATACTGATCTTGGCATCCCTTACAGCAGTCTCCTTAACGACGTTGTTCGCATTAGCTATGCTCTCCACCTCATGCTTGTTTTCCCGGTGATCTTCTTCTCGTTGCGCTTCAATTTTGACGATCTTATCTTTCCTTCAGCTAGGCCACTGAATTCAGATCAGTGTAGATTTGTCTCGATCACCAGTGGACTTGTTGCTTTAGTGTACATAGCTGCAAACTTTATACCAAGCATATGGGATGCTTTTCAATTCACTGGAGCCACTGCCACCGTTTGCCTTGGGTTTATTTTCCCATCTGCGATCGCTCTAAGGGATTCTCATGGCATTGCATCAAAGAAGGACAAGATTTTATCCGTTATAATGATCGCTCTTGCCGTATTCTCGAACATCATAGCGATATACAGTAACGCCAATTCCATGTTCAGGAAGGAAGTTGATGATCTTCATTGA 1551 0.3727 MTLQNNTPTRTKKQLIIDDDDANEHSPLLPTKRDHDYDDGDADGASFVGSVFNLSTTIIGAGIMALPAAIKVLGLLLGISSIIFLAFLTDTSLDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKASSYAHVMGSAFGRLGTMVLQISVFINNLGILVVYMIIIGDVLSGTSSSGIHHFGVLEGWFGECWWTGRYFILLVTTLFIFAPLAFVKRIDSLRYSSALAVALAIVFLVITAGITLFKLFNGSIASPRLLPNVTDSASLWNLFTAVPVLVTAFVCHYNVHTIDKELGDSSLIQPVVRASLSLCSSIYILTALFGFLLFGESTLDDVLANFDTDLGIPYSSLLNDVVRISYALHLMLVFPVIFFSLRFNFDDLIFPSARPLNSDQCRFVSITSGLVALVYIAANFIPSIWDAFQFTGATATVCLGFIFPSAIALRDSHGIASKKDKILSVIMIALAVFSNIIAIYSNANSMFRKEVDDLH 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00111 516 Coils Coil 157 157 - -
Aip01g00111 516 PANTHER AMINO ACID TRANSPORTER AVT6A 157 512 - -
Aip01g00111 516 PANTHER AMINO ACID TRANSPORTER AVT6A 14 95 - -
Aip01g00111 516 PANTHER AMINO ACID TRANSPORTER 157 512 - -
Aip01g00111 516 Pfam Transmembrane amino acid transporter protein 157 504 IPR013057 -
Aip01g00111 516 Pfam Transmembrane amino acid transporter protein 45 93 IPR013057 -
Aip01g00111 516 PANTHER AMINO ACID TRANSPORTER 14 95 - -
Aip01g00111 516 Coils Coil 95 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00111 Aip-Chr1 1161442 1164371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00111 26 94 Amino Acid or Auxin Permease AAAP Family AT3G30390 57.971 1.76e-16 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00111 K14207 - gmx:100778699 604.364