Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00103 ATGGCTGAAGATACTTTGGATCTTGATTTGCCTCATAGAAGTTCCGGCCTTTTAAGAGATCGAGTTCATTTGGTTAAAAGGAAAGACTTGGATCGCTATGAGATCGCAGCAATCCAAGATCAGTTATCATTCGAGAAAGGATTCTTTATAGTAATCCGCGCGTGCAAGATGTTGGCGCAAAAGAATGATGGAATGATATTGGTAGGTGTGGCAGGTCCTTCAGGAGCAGGGAAGACTATGTTAACAGAAAAGATCCTAAACTTCATGCCAAGCATTGCAGTAATTTCCATGGACAATTACAATGATGCTAGTAGAATTGTTGATGGAAACTTTGATGATCCACGCTTAACGGATTATGAAACATTGCTCCCAAATTTACATGATTTAAAGGCAGGAAAGGCAGTCCAGGTTCCTATATATGATTTCAAATCGAGTTCACGAACAGGATACAGAACTGTTGATGTTCCAAGCTCCCGAATTGTGATCATAGAGGGAATCTATGCCTTGAATGAGAAGTTACGGCCGCTATTAGACCTTCGAGTATCTGTCACCGGTGGAGTACACCTTGACCTTGTTAAAAGAGTTATACGCGACGTACAACGAGCCGGACAAGAACCTGAAGAAATCATTCATCAAATATCAGAAACTGTATATCCAATGTACAAAGCATTTATTGAGCCAGATCTTCAAACTGCACACATCAAAATCATTAACAAGTTCAATCCATTCACTGCATTCCAAAGTCCTACATACATATTAAAGTCAGCAAGGAATGTAATAGTGGAACAAGTTAAAGATGTGATCTCCAAAGATTTTCGCGAAACAAAGGAGCAGACTTATGACATATATCTTCTACCTCCTGGTGAAGATCCAGAGAGTTGCCAATCCTATTTACGAATGCGAAATACAGATGGAAAATATGTTCTTATGTTCGAGGAATGGGTGACAGATGATCCATTTGTGATATCCCCGAGAATCACTTTTTCGGTCAGTGTTCGTCTCCTCGGAGGACTAATGGCGTTGGGATACACAATAGCAACCATCCTTAAAAGAAACAGCCATATCTTTTGTGATGATAGTGTTTGTGTTAAACTAGATTGGCTTGAGCAACTTAATAGACATTATGTTCAGGTACTTGGAAGAGATCGTTTACTTGTAATTAACAAAGCGCAGCAGTTGGGTCTAGAAGGTTCCTACATTCCTCGAACCTACATTGAACAGATTCAACATGAAAAGCTTGGAAATGAAGTTATGGCCCTGCCGGAAGATTTAAAGACGACGTTGAGCCTCGACGAGGACTTTGCGTCGAGCCCGAAAGAATTTGCTGACCAGGTTTCCATGACCATGAAACATAAGCAAATAGGTTTGTCTAGATCATTTACAAATCTAAGAGACAAGAATCAAGCCAAACTTGGAGGTTATGTCTCCAACAATAGAGATCTTCATGAAAGAAATGATTTGGATGAATCAAAAACAATGGCAAATGAGGGAGCCATAACTAAACTTGTGGAAAGAATTTCTTGCTTATATGATAGAATGGATGATTTTACAAACTACATTGAAGAGATGAACTTCAAGTTATCTCTGAAGAAAATTTGTCATTGCCAACAAAATATGCACCTACAAGTTGGTTCATGCAATGGTTGTTCTTCCACCTCTTACTTCATCACTAGCTTGAGCAACGGTTCCTCCGTCGGGTCGCCACCACCAACTAAGGAGTTTATCTTAATGGATGAGATATCAGGTATTGTAAGGGGTCAGCATCAAATCATGCATCAATTGGACAATCTTAATAAACTACTTGTGGGGAAAATGGAAGAAAGGACTCACCAAACAAGCCCCATGAAGAAAGGTGCATTAATAAGTGCTACAACACATTCAGATTCAACTGGACCACAAGTTGTGATGGGTTTGGCTTTTGGTTGTTTGGGAATATTTTTTGTGATGGGTATTTTTTATAGATTGAGGTAG 1971 0.3947 MAEDTLDLDLPHRSSGLLRDRVHLVKRKDLDRYEIAAIQDQLSFEKGFFIVIRACKMLAQKNDGMILVGVAGPSGAGKTMLTEKILNFMPSIAVISMDNYNDASRIVDGNFDDPRLTDYETLLPNLHDLKAGKAVQVPIYDFKSSSRTGYRTVDVPSSRIVIIEGIYALNEKLRPLLDLRVSVTGGVHLDLVKRVIRDVQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTAFQSPTYILKSARNVIVEQVKDVISKDFRETKEQTYDIYLLPPGEDPESCQSYLRMRNTDGKYVLMFEEWVTDDPFVISPRITFSVSVRLLGGLMALGYTIATILKRNSHIFCDDSVCVKLDWLEQLNRHYVQVLGRDRLLVINKAQQLGLEGSYIPRTYIEQIQHEKLGNEVMALPEDLKTTLSLDEDFASSPKEFADQVSMTMKHKQIGLSRSFTNLRDKNQAKLGGYVSNNRDLHERNDLDESKTMANEGAITKLVERISCLYDRMDDFTNYIEEMNFKLSLKKICHCQQNMHLQVGSCNGCSSTSYFITSLSNGSSVGSPPPTKEFILMDEISGIVRGQHQIMHQLDNLNKLLVGKMEERTHQTSPMKKGALISATTHSDSTGPQVVMGLAFGCLGIFFVMGIFYRLR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00103 656 Gene3D - 65 274 IPR027417 -
Aip01g00103 656 ProSiteProfiles CYTH domain profile. 245 410 IPR023577 -
Aip01g00103 656 PANTHER URIDINE KINASE 9 614 - -
Aip01g00103 656 CDD UMPK_like 67 239 - -
Aip01g00103 656 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 236 IPR027417 -
Aip01g00103 656 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Aip01g00103 656 SUPERFAMILY CYTH-like phosphatases 276 407 IPR033469 -
Aip01g00103 656 Pfam CYTH domain 272 404 IPR023577 -
Aip01g00103 656 PANTHER PHOSPHORIBULOKINASE/URIDINE KINASE-LIKE PROTEIN 9 614 - -
Aip01g00103 656 PRINTS Uridine kinase signature 65 82 - -
Aip01g00103 656 PRINTS Uridine kinase signature 132 147 - -
Aip01g00103 656 PRINTS Uridine kinase signature 188 198 - -
Aip01g00103 656 PRINTS Uridine kinase signature 224 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00103 Aip-Chr1 1060951 1066781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00103 53 236 PRT Gene Family AT1G55810 30.412 1.28e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00103 K00876 - gmx:100781286 936.021