Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00096 ATGAACAATAATAATAATACTAATAATATTCAGTTTCCTTGTTTTCCAACACAAACAACAGATCTCCTTAACCTTCTCCACTTTCCAACAAGTCCTAAGAACTCTTCTATCTCCTTTGAAAACCACAACAACAACATAATAACATGTCTTCCAAACCCTAGTAGCAGTAGTAGCAACATCATTGTGGGACAAGAAAGTTCAAATTTTTCCAATGTTTTCAATGACCCATTATTGCATTTGAACCTTCAAGCACCTCCTCTGCTTCATCAATCATCATCATCAATGAGGGAGTTGTTTCATCATCATGGCTACTACAACATGGTACCAACAACATCAAGAAGTGATTTTGTGTTTGGATTAGGGGAAAATAACAACAACAACAACAATAATAATGACATTATTGTTGAATTAGAAAACGGTGGTTATGGAAGAGATGTTCTTGAAAATGGGGTGCTAGAAGAGTTCACTAATCATCATCAAGAAGTGGCTAATAAGAAGAGAGGAGGAAAAAGGAGCAATAACAACAATATTAAGCAATTTAGTAGTACTAACACTGAGAGACAAAGGAGAGTGGATTTGGGTGGCAAATTTGATGCTTTGAAAGAACTCATACCAAGCTCCACCAAGAATGATAGAGCATCAGTGGTAGGAGATGCTATTGACTACATCAAAGAGCTTCTAAGAACAGTGAATGAACTCAAATCATTGGTGGAGAAAAAGAGGTATGAAAAACAAAGGGTGAAGAAGAAGCTCAAAATTGAAGATGAAGAAGAAGAAGAAAAAGAAGATGATGAGAATAATTCATCATCATATAGTGAGAGCCTAACAAGGAGTTCTTGGATACAAAGAAAATCAAAAGAAAGTGAGGTTGATGTGAGAATCATTGACAATGAGGTAACAATAAAGATTGTTCAAAGGAAGAGGGTCAATGACAATAATTGCATATTAGTTTATGCTTCAAAGGTTCTTGATGAACTTAAACTTGATCTTCAACATGTTGGTGGTGGCCACATTGGTGATTTCTGCAGCTTTCTCTTCAATAGCAAGATATGTGAAGGTTCATCGGTATATGCTAGTGCCATAGCCAACAAGCTTATTGAGGTCATGGACAGAAGTTTGTTAACAATATGA 1131 0.3572 MNNNNNTNNIQFPCFPTQTTDLLNLLHFPTSPKNSSISFENHNNNIITCLPNPSSSSSNIIVGQESSNFSNVFNDPLLHLNLQAPPLLHQSSSSMRELFHHHGYYNMVPTTSRSDFVFGLGENNNNNNNNNDIIVELENGGYGRDVLENGVLEEFTNHHQEVANKKRGGKRSNNNNIKQFSSTNTERQRRVDLGGKFDALKELIPSSTKNDRASVVGDAIDYIKELLRTVNELKSLVEKKRYEKQRVKKKLKIEDEEEEEKEDDENNSSSYSESLTRSSWIQRKSKESEVDVRIIDNEVTIKIVQRKRVNDNNCILVYASKVLDELKLDLQHVGGGHIGDFCSFLFNSKICEGSSVYASAIANKLIEVMDRSLLTI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00096 376 CDD bHLH_AtMYC1_like 185 241 IPR045896 -
Aip01g00096 376 Gene3D - 178 254 IPR036638 GO:0046983
Aip01g00096 376 MobiDBLite consensus disorder prediction 169 188 - -
Aip01g00096 376 MobiDBLite consensus disorder prediction 162 189 - -
Aip01g00096 376 SMART finulus 183 232 IPR011598 GO:0046983
Aip01g00096 376 Pfam Helix-loop-helix DNA-binding domain 185 226 IPR011598 GO:0046983
Aip01g00096 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 183 244 IPR036638 GO:0046983
Aip01g00096 376 PANTHER TRANSCRIPTION FACTOR BHLH91 5 374 IPR045895 GO:0006355|GO:0048658
Aip01g00096 376 Coils Coil 223 264 - -
Aip01g00096 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 226 IPR011598 GO:0046983
Aip01g00096 376 PANTHER TRANSCRIPTION FACTOR BHLH91 5 374 - -
Aip01g00096 376 MobiDBLite consensus disorder prediction 253 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00096 Aip-Chr1 1009085 1011222 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00096 17 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 38.727 2.85e-62 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip01g00096 HLH 6.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00096 - - aip:107643853 661.759