Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00082 ATGAGCCCCAACAATGAGCCAATTGCAACGAGTGTCATTGTCTCCGGTGGCTACGAGGATGATATGGACGAAGGAGATGTCATAATCTACACTGGACAAGGCGGGCAGGCCATGAATTCCGTGAGGCAAGCCACGCACCAGAAGTTGGAGAGTGGGAACCTCGCATTGGAGAGGAGTATGTATCATAATATTGAGGTTAGAGTGATTAGAGGGATGAAGTATGAGGGAGCCGCTGCGAAATCCGGTAAGATTTATGTCTATGATGGTTTATATAGGATTTCTGAGTGCTGGTTTGATGTTGGAAAGTCCGGTTTTGGTGTTTATAAGTATAAGCTTGTTAGGGTTGAAGGGCAGCCTAAGATGGGTAGTGCTATTCTTAAAGAAGCTAGGAGTATTAGGAAAAGTGGAGTGGATTTTCAACCAATGTATTGTCTTTCTGTTGATATTTCCAATAAGAAGGAGAAGGTTGCGGTTCGGCTCTTTAATGACATTGATGATAGTAAGGAGCCGCTTTGTTTTGATTATCTTCCGACAACTGTTTTCCCTCCATTTGTGTTTCATCAGAGCGGGACAGCTACTGGGTGTGATTGTATCGACGGTTGTACGGATGGATGCTTTTGCAGTATGAAGAATGGAGGCGATTTTCCTTATAATCAGCAGGGGATCCTTGTGAGGGGGAAGCCTTTGATTTTTGAGTGTGGCCCTTTTTGCAGTTGTCCACCTCAATGTAGGAACCGTGTGTCACAGAATGGGGCGAAGAACAGGTTGGAGGTTTTTAGGTCGAAGCAGACAGGTTGGGGAGTAAGGTCCTTGGACCTTATTCAAGCTGGTGCTTTTATCTGTGAGTATGCAGGGGTTGTTTTGACTAGGGAGCAAGCACAGCTTTTGACGATGAATGGTGACTCGTTGATATATCCTAATCGGTTTTCTGAAAGGTGGGCAGAATGGGGTGATTTGTCTCAGGTAAACTCGGACTATGTGCGTCCATCTTATCCGTCAATTCCTCCTTTGGATTTTTCTCTGGATGTGTCAACAGTCCGAAACGTTGCTTGCTATATGAGCCATAGTTCAAGTCCAAATGTTATGGTTCAATTTGTTCTCCGAGTTTCAGGCATTGTTTCACTGAGACTTAGCTTGATTTTCAGAAGGGTTCACTGTACCCAGATTTGCGGAACCGTTGGAGTGCTTGCTTATGAACCCTTAGGGTACCGCAAATCGCGTAATAGCTATATTACATAA 1239 0.4455 MSPNNEPIATSVIVSGGYEDDMDEGDVIIYTGQGGQAMNSVRQATHQKLESGNLALERSMYHNIEVRVIRGMKYEGAAAKSGKIYVYDGLYRISECWFDVGKSGFGVYKYKLVRVEGQPKMGSAILKEARSIRKSGVDFQPMYCLSVDISNKKEKVAVRLFNDIDDSKEPLCFDYLPTTVFPPFVFHQSGTATGCDCIDGCTDGCFCSMKNGGDFPYNQQGILVRGKPLIFECGPFCSCPPQCRNRVSQNGAKNRLEVFRSKQTGWGVRSLDLIQAGAFICEYAGVVLTREQAQLLTMNGDSLIYPNRFSERWAEWGDLSQVNSDYVRPSYPSIPPLDFSLDVSTVRNVACYMSHSSSPNVMVQFVLRVSGIVSLRLSLIFRRVHCTQICGTVGVLAYEPLGYRKSRNSYIT 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00082 412 SUPERFAMILY PUA domain-like 4 128 IPR015947 -
Aip01g00082 412 Pfam Pre-SET motif 149 246 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip01g00082 412 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 1 367 - -
Aip01g00082 412 Gene3D SET domain 123 378 IPR046341 -
Aip01g00082 412 SMART G9a_1 1 118 IPR003105 -
Aip01g00082 412 SMART set_7 254 386 IPR001214 GO:0005515
Aip01g00082 412 ProSiteProfiles Pre-SET domain profile. 193 251 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip01g00082 412 Gene3D - 1 122 IPR036987 -
Aip01g00082 412 SUPERFAMILY SET domain 139 367 IPR046341 -
Aip01g00082 412 Pfam SAD/SRA domain 6 118 IPR003105 -
Aip01g00082 412 Pfam SET domain 265 366 IPR001214 GO:0005515
Aip01g00082 412 ProSiteProfiles SET domain profile. 254 394 IPR001214 GO:0005515
Aip01g00082 412 ProSiteProfiles YDG domain profile. 1 114 IPR003105 -
Aip01g00082 412 SMART preset_2 146 238 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Aip01g00082 412 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 1 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00082 Aip-Chr1 856371 859549 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00082 6 366 Su(var)3-9 homologs AT5G04940 42.896 4.03e-79 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aip01g00082 SET 9.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00082 K11420 - aip:107626851 750.355