Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00066 ATGTATGTTCCATCTTTTATACCACCTCCAATGGCAACCAAGGGGAAAGAATCGGAAAGGAAAAAAGAGGAGGAAAAACCTAAGGACAAAGAGAAAGGAAAGTCGAGGAACATTGATCATTTCATGGAGGAGCTAAAGCACGAGCAAGAGATGAGGGAGAGGCGGAACCAAGAACGTGAAAATTGGCGTGATGGGCGCCACGGAGAACATTCCACTTCAAGTCGCTTTGACGAACTACCTGATGACTTTGATCCAAGTGGAAGACTTCCTGGATCATTTGATGATGGCGATCCCCAAACTACGAATCTGTATGTTGGAAACCTCTCACCCAAGGTTGATGAAAATTTTCTGCTCCGTACTTTTGGAAGATTTGGACCTATTGCCAGTGTGAAGATAATGTGGCCTAGGACAGAAGAGGAGCGAAGACGACAAAGAAACTGTGGCTTTGTGGCTTTCATGAACAGAGCTGATGGACAGGCTGCAAAGGATGAAATGCAAGGAGTTGTGGTTTATGAGTATGAATTGAAAATTGGGTGGGGAAAGTCTGTTGCGCTCCCATCGCAAGCCCTACCTGCACCCCCACCAGGGCATATGGCCATCAGGAGTAAGGAGGGTAGTACTGTTATCCTATCTGGTCCATCAGGCGGTCCACCTGTGACTTCTGTGCCTAATCAGAACTCTGAACTGGTCCTTACTCCTAATATTCCTGATATAATGGTTACACCTCCTGAGGATGAACATCTGAGGCATGTAATTGATACAATGGCTTTATATGTTCTGGATGGTGGGTGTGCTTTTGAACAAGCTATCATGGAGAGGGGTCGTGGAAATCCTCTTTTCAACTTCTTGTTTGTTCTTGGCTCAAAGGAACACACCTACTATGTTTGGAGACTCTACTCATTTGCCCAGGGTGATACTCTTCAACGATGGCGGACTGAACCTTTTATCATGATAACGGGTAGTGGAAGATGGATACCCCCCTCATTACCAACAGCAAAAAGTCCAGAACATGAGAAGGAGTCTGGTCCAACACATGCAGGAGGAAGAAGCAGGCGTGTAGAGCCTGAAAGAACACTGACTGATGCACAGAGGGACGAGTTTGAGGATATGCTGCGGGCTTTAACATTAGAGAGGAGCCAGATAAAAGAGGCCATGGGGTTTTCTTTGGATAATGCCGATGCAGCTGGCGAGATTGTTGAAGTTTTAACAGAATCATTGACGCTTAAAGAAACCCCCATTCCAACTAAAATTGCAAGGCTCATGCTTGTATCTGATATTCTTCACAATAGTAGTGCTCCTGTAAGAAACGCATCAGCATATCGCACCAAGTTTGAAGCAACATTACCTGACGTAATGGAGAGTTTTAATGACTTGTATCGTAGCATAATGGGGCGCATTACTGCTGAAGCACTTAAAGAACGAGTACTGAAAGTTTTGCAAGTGTGGGCCGATTGGTTCCTCTTTTCAGATGCTTATGTGAATGGCTTAAGAGCCACTTTTCTTCGACCTGGGAACTCCGGTGTTATACCCTTCCATTCCATATGTGGTGATGCTCCTGAGATCGAACAGAAGGCCACTTCCGAAGATATGGTTGGCGGCAAGGCCAACCAAGATGCTGCATTGGCAATGGGCCGAGGAGCTGCAACAAGGGAGCTAATGAGTTTGCCTCTTGCCGAGCTGGAAAGACGGTGCCGACACAATGGATTGTCACTTGTTGGTGGCAGAGAAATGATGGTTGCACGGTTGCTAAGTCTTGAAGAGGCAGAAAAGCAAAGGGGTTATGAACTGGATGACGAATTGAAATATGCTCAAAACCAAGCAAATGCAGGGAAGTATACAAGTACTCGGCGGGATACGAGTGCTGAGCCTGAACCAGCAGGATTATCTGGATGGAACCACTATTCGGATGAAGATTTGCCTTCACAAGGCAAAGGGTCTTCACCTTTAGCATCAACCCTTTCTATTCCACAGCCTGAACTTAAAGCCTTTACAAAAAAGGAGAAGAATGATCCAGTTTTGCCTGCCTCTAAATGGGCTCGAGAGGATGATGAGAGTGATGATGAGCATAGGAGGGATGGAAAGAATCTTGGGCTAAGCTACTCGTCTTCTGGTAGCGAGAATGTTGGAGACGGTCTTAGTAAAGCTGATGAACACGAGTCTGCTGCAGATACAAGTTTTTCAGCTCACACTGACAGTGGAATGAATGAAGAGCAGAGACAAAAGTTACGACGCTTGGAGGTTGCTCTAATTGAATATCGGGAGTCTCTTGAAGAGAGGGGAATTAAAAATTTGGAGGAAATTGAGAAGAAAGTTGAAGCACACCGGAAACGGCTGCAATCAGAGTACGGTTTATCAGATTCTGGCGAAGATGGTCAAGGCAATAGACGAACGTCTTCGGAGAGGAGGGATAGGCACGATGTCTCAAGGAAACGGCACCGCAGCCCGAGTCCAAGCCATAGTCCACATCAAAGATTATCAAGTCGAGATAGCCGCGAAAAGAGTGGAAGCCGAGAGAGGGATGATCATGACAGGGAAAGGAGCAGGGACAGAGATAGGGACCGGGACCGGAGAAGACGGACCAAATAA 2586 0.4633 MYVPSFIPPPMATKGKESERKKEEEKPKDKEKGKSRNIDHFMEELKHEQEMRERRNQERENWRDGRHGEHSTSSRFDELPDDFDPSGRLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGGPPVTSVPNQNSELVLTPNIPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTAKSPEHEKESGPTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDVMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKATSEDMVGGKANQDAALAMGRGAATRELMSLPLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAQNQANAGKYTSTRRDTSAEPEPAGLSGWNHYSDEDLPSQGKGSSPLASTLSIPQPELKAFTKKEKNDPVLPASKWAREDDESDDEHRRDGKNLGLSYSSSGSENVGDGLSKADEHESAADTSFSAHTDSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVEAHRKRLQSEYGLSDSGEDGQGNRRTSSERRDRHDVSRKRHRSPSPSHSPHQRLSSRDSREKSGSRERDDHDRERSRDRDRDRDRRRRTK 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00066 861 Pfam cwf21 domain 735 781 IPR013170 -
Aip01g00066 861 Gene3D - 734 785 - -
Aip01g00066 861 ProSiteProfiles CID domain profile. 359 504 IPR006569 -
Aip01g00066 861 PANTHER - 2 856 - -
Aip01g00066 861 SUPERFAMILY RNA-binding domain, RBD 94 189 IPR035979 GO:0003676
Aip01g00066 861 ProSiteProfiles SURP motif repeat profile. 251 294 IPR000061 GO:0003723|GO:0006396
Aip01g00066 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 182 IPR000504 GO:0003723
Aip01g00066 861 SUPERFAMILY ENTH/VHS domain 363 500 IPR008942 -
Aip01g00066 861 Coils Coil 735 755 - -
Aip01g00066 861 MobiDBLite consensus disorder prediction 14 84 - -
Aip01g00066 861 Coils Coil 757 781 - -
Aip01g00066 861 Pfam CID domain 366 494 IPR006569 -
Aip01g00066 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 175 IPR000504 GO:0003723
Aip01g00066 861 Pfam Surp module 249 301 IPR000061 GO:0003723|GO:0006396
Aip01g00066 861 MobiDBLite consensus disorder prediction 1 96 - -
Aip01g00066 861 SMART cwf21_2 734 783 IPR013170 -
Aip01g00066 861 Coils Coil 364 384 - -
Aip01g00066 861 SUPERFAMILY Surp module (SWAP domain) 225 306 IPR035967 GO:0003723|GO:0006396
Aip01g00066 861 MobiDBLite consensus disorder prediction 326 360 - -
Aip01g00066 861 SMART 558neu5 366 501 IPR006569 -
Aip01g00066 861 MobiDBLite consensus disorder prediction 635 658 - -
Aip01g00066 861 MobiDBLite consensus disorder prediction 661 695 - -
Aip01g00066 861 PANTHER RNA PROCESSING PROTEIN LD23810P 2 856 - -
Aip01g00066 861 CDD RRM_SR140 100 183 IPR035009 -
Aip01g00066 861 MobiDBLite consensus disorder prediction 333 360 - -
Aip01g00066 861 ProSiteProfiles SAP motif profile. 552 586 IPR003034 -
Aip01g00066 861 MobiDBLite consensus disorder prediction 824 861 - -
Aip01g00066 861 Gene3D - 359 505 IPR008942 -
Aip01g00066 861 Gene3D - 11 184 IPR012677 -
Aip01g00066 861 Gene3D Surp module 237 306 IPR035967 GO:0003723|GO:0006396
Aip01g00066 861 SMART rrm1_1 102 178 IPR000504 GO:0003723
Aip01g00066 861 MobiDBLite consensus disorder prediction 607 739 - -
Aip01g00066 861 MobiDBLite consensus disorder prediction 778 861 - -
Aip01g00066 861 SMART surpneu2 249 303 IPR000061 GO:0003723|GO:0006396
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00066 84 178 Eukaryotic Initiation Factors Gene Family AT1G22760 31.579 1.13e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00066 K12842 - gmx:100776093 1441.4