LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip01g00054	ATGGATGAGGCTAGACCTCGGAATAATGAAACTGCTGCATCATCATCATCGCCTTCAGCTTCGCGGTTGCCGGTGTCTTCCGGATGGCGTCCGAGCCGGGCTGTGTTTGCTCCTTATGGGCCACCACAGGGTGAAGAAGCCACAGCTCAAAGGCCACAGAGATTGAGAGTGGCAGTGACAGTGAGGAAGCCTTTGGTGGCAAGATTGACCAAGGAGATAGTTGAAACATATCAAACATGCAATCCAAAGTTTAAATATTCTGAAGATCTAAATCCAAAAAGATTTTTGACGAGTCCATCAATTGGAGTGCTTAATGATGGCTATGATAATGTAAACTCAGATCTTATTCTGACAGTGAATTTTGTCTTGGTCCATGTAGAGAAAAATAAAAGATATATTGTCAAAGATCTTCTTGGCCATGGGACATTTGGTCAAGTGGCGAAGTGCTGGGATTCAGATACCAACAGTTTTGTTGCTGTGAAGATCATTAAAAATCAACCTGCATACTATCAACAGGCACTGGTTGAAGTAACTATATTGACGACGTTAAATAAGAAGTATGATCCTGAGGATAAGCATCATATTGTTCGTATATATGATTATTTTGTGTATCAACGGCATTTGTGCATATGCTTTGAACTACTGGACACAAACTTGTATGAGCTTATCAAGATGAATCATTTCAGAGGATTATCGCTTAGCATTGTTCAGCTATTCTCTAAGCAGATTTTATGTGGACTGGCTCTATTAAAGGATGCTGGCATTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACAAGCACTGTGAAGCCAGCAGAAATCAAAATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTTTACTCCTATATTCAGAGTCGATATTACAGATCCCCTGAGGTTCTTCTTGGATATCAGTACACAACAGCTATTGATATGTGGTCCTTTGGGTGCATAGTGGCTGAATTGTTTCTTGGATTACCATTATTTCCCGGGGCTTCAGAATTTGATCTTTTGAGGCGGATGATTGAAATACTTGGAGGACAGCCACCTGATTATGTATTGAGGGAGGCCAAAAACACAAGTAAATTCTTCAAGTGTATTGGAAGTCTCCAGAGCATAGAGATTAGTGAGGGTTCCAAAAATGGAAGAAGTGTTTATCAAGCATTGACGGAGGAAGAGTATGAAGTTAGAGAATTGAAGAAGCCAACTGTTGGAAAGGAGTATTTTAATCATATGAACCTTGAAGCAATTGTTACAAACTATCCCTATAGGAAAAACCTTCCCAAGGAAGATATTGTCAAAGAAAGTCAAATAAGATTGGCTCTTATTGATTTTTTGAGAGGACTTGTTGAGTTCGATCCTGCGAAACGATGGTCACCTTTCCAGGCCTCAAAACACCCTTTTGTAACTGGAGAGCCTTTTACACAACCTTATCAGCCTCCCCCAGAGACCCCTCGTGTGCCGGTGGTTCAAACTGTCAAGGTGGATAATCATCCAGGTGGAGGGCACTGGTTTGCTGCTGGCCTATCACCTAATGTTCCAGGAAAAAATAGAGCTTCGATCTATAGCAACGCACATTTTCAGATGATGCAGTATCCTCCTTCTAATAGTTATGGTAGCGTAGGAAGCCATGGGAGCTATAATGAGAGCATTGGGCTTGGTAGCAGCTATGGAAGTTATGGAGACAATAGTAACATGTTTCCTTACTATTCACCGGTTGGTCCATCTGGTATGAACATGCATAACCAAGGTGCGAGAGGAACCACTCATGGATCACCTTTAGGGAAGACACCTGCAGTTAGCCAATTTAATCGACGGAAAAACTGGGGATATTCGGGAAGTCCTCAACCTCAAGAAACAGTATTTTCTTCACATTGGCAAGGACAAGGTCCTGACAACTCAAGCCTTCCCGAGGGAACATCCCAAGCCTTTGGCAGCTCCCCGTCTTACGTGCAGTCAAATATGAATCCTGGAACCTGGAAGCAGCGAGGAAGTGGAGGGTTATCTTCGAATTTGGCAGTGCAGTCAACAGAGTTGGCTCATGACAATGCAGATTCAGGCATGCCTGATCCTGGAGATTGGGATCCTAATTATAGTGATGAACTACTACTGCAAGATGATGGTGCAGATGAAAGTTCCTTGACAAATGATTTTTCTAGAAGCATGAGTCTTGGTTCCACGGAACCGTGGGTTGGATTGGGAAGGTTGAACCATGGAACCAGTACAAGCTCTCCAATGATCGTACAGAGAATACCCGCATCAGGTCAAGCATTTTCTGGTGAGATGGGTAGCTCTCCAATGCATCATGATCTTCAATACATGTCAAAGCCTTTTCATTATATACCTCATGTTTTACAAAATTCTCCAAGCCGATTCGGTCACCAACCTACTCAAAGGTTTCCACATGGTAGACCTCCCCAGAGTGGCGACTGGAATCAGCTTAAGGTTGCACCTCCTCCTCCTAGTTTCGGTAGTGTAGGCCAACGCTCTCCCAGGAATAGCTCATTCTCCAACAACATGACATGGGGGCGAAGAATGAATCCTCCGGTTTCAAGCATGCCACCAACATCTCGCGCAAGAAAAGATTATGCAAGGATTGACTAA	2622	0.4302	MDEARPRNNETAASSSSPSASRLPVSSGWRPSRAVFAPYGPPQGEEATAQRPQRLRVAVTVRKPLVARLTKEIVETYQTCNPKFKYSEDLNPKRFLTSPSIGVLNDGYDNVNSDLILTVNFVLVHVEKNKRYIVKDLLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILTTLNKKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKMNHFRGLSLSIVQLFSKQILCGLALLKDAGIIHCDLKPENILLCTSTVKPAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIEILGGQPPDYVLREAKNTSKFFKCIGSLQSIEISEGSKNGRSVYQALTEEEYEVRELKKPTVGKEYFNHMNLEAIVTNYPYRKNLPKEDIVKESQIRLALIDFLRGLVEFDPAKRWSPFQASKHPFVTGEPFTQPYQPPPETPRVPVVQTVKVDNHPGGGHWFAAGLSPNVPGKNRASIYSNAHFQMMQYPPSNSYGSVGSHGSYNESIGLGSSYGSYGDNSNMFPYYSPVGPSGMNMHNQGARGTTHGSPLGKTPAVSQFNRRKNWGYSGSPQPQETVFSSHWQGQGPDNSSLPEGTSQAFGSSPSYVQSNMNPGTWKQRGSGGLSSNLAVQSTELAHDNADSGMPDPGDWDPNYSDELLLQDDGADESSLTNDFSRSMSLGSTEPWVGLGRLNHGTSTSSPMIVQRIPASGQAFSGEMGSSPMHHDLQYMSKPFHYIPHVLQNSPSRFGHQPTQRFPHGRPPQSGDWNQLKVAPPPPSFGSVGQRSPRNSSFSNNMTWGRRMNPPVSSMPPTSRARKDYARID	873

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip01g00054	873	PANTHER	BNAC04G29850D PROTEIN	584	819	-	-
	Aip01g00054	873	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	255	267	IPR008271	GO:0004672\|GO:0006468
	Aip01g00054	873	MobiDBLite	consensus disorder prediction	8	26	-	-
	Aip01g00054	873	ProSitePatterns	Protein kinases ATP-binding region signature.	138	161	IPR017441	GO:0005524
	Aip01g00054	873	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	26	571	-	-
	Aip01g00054	873	SUPERFAMILY	Protein kinase-like (PK-like)	125	499	IPR011009	-
	Aip01g00054	873	MobiDBLite	consensus disorder prediction	585	675	-	-
	Aip01g00054	873	Gene3D	Transferase(Phosphotransferase) domain 1	213	476	-	-
	Aip01g00054	873	ProSiteProfiles	Protein kinase domain profile.	132	475	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip01g00054	873	MobiDBLite	consensus disorder prediction	1	28	-	-
	Aip01g00054	873	Gene3D	Phosphorylase Kinase; domain 1	97	212	-	-
	Aip01g00054	873	Pfam	Protein kinase domain	133	475	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip01g00054	873	MobiDBLite	consensus disorder prediction	832	860	-	-
	Aip01g00054	873	PANTHER	BNAC04G29850D PROTEIN	26	571	-	-
	Aip01g00054	873	CDD	PKc_YAK1	132	475	-	-
	Aip01g00054	873	PANTHER	DUAL SPECIFICITY PROTEIN KINASE	584	819	-	-
	Aip01g00054	873	MobiDBLite	consensus disorder prediction	798	873	-	-
	Aip01g00054	873	SMART	serkin_6	132	475	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip01g00054	Aip-Chr1	572548	580847	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip01g00054	131	361	MAP Kinase Gene Family	AT3G18040	33.740	2.02e-31	127

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_DYRK-YAK	Aip01g00054		Pkinase	1e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip01g00054	K18670		-	gmx:100786931	1356.27