Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00053 ATGATGGCAACACTCTTCAGAAAACTATGCGTTTGCAGTGAAACGGCGTCGTATAACAACCCCCGACCCTCATCCGAAGCTGCTGCTTCTTCAGGTTCGTTGCTGGAATCACTTCCAAACGAGATTGTGATGCAGATCGTACGGTTATTGGGCCCAAAGCAGGCCGCTCAGCTCAGCGTGGTTAACAGAAAGTGGCGATCCCTCATCTCCGATAACGAACTCTGGGCCCACTTTCTTGAGGTCCACCATCCTCAGCCATGGGATTCCGTGCTTTTCTCCGAGACTTTTCTGGCCTCTGCTTACCCTCTTCTTCCTCTTCCAACCTCAGTTGCTGAGATGCCATCTGTGTCATTCAAGCAAGTTTATGGCCAGCGTGCAAGACTGCCTTGTTCTGTTATCATTGATGGTGGTTCTGGCTATTGCAAATATGGTTGGAGCACACTCCCTTGTCCATCATGGCGGTCGGCGACCTTTCTGGAATTTGGTAATGTGGAAACGCCAATATACACCAGACTCAGACACTTTTTTTGGACTATTTATAGCAGGATGAAGGCGAAACCAAGTTCTCAACCAGTTGTTGTTTCTATACCAATATGCCACTATGACGATACTGAATCAGCCAAAGCCTCAAGGCGGCAGCTTAAGGAAGCAATCTATACTGCCCTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTAAATCAGGCAGTTCTAGCTCTTTTTGCTGCCAAACAAACTTCTGGAATAGTTGTGAATATAGGTTTTCAAGTCACATCTGTTGTTCCAATTTTAAATGGCAAAGTGATGCGAAAAGTGGGTGTGGAGGTTGTGGGGTTGGGAGCCCTAAAGCTCACTGGATTCCTTAGAGAACAAATGCAACAGAATAACATGAGTTTTGAATCAATGTACACTGTTCGAATGCTGAAAGAGAAGCTATGCTATGTTGCTATTGATTATGAAGCAGAGCTATCTAAAGATACACAAGCATCATTTGAAGCTGCAGGAGAAGGATGGTTTATACTTAAAAAAGAGCGCTTTCAAACCGGAGAGATCTTATTCCAGCCACGTCTTGCCGGAGTACGAGCAATGGGTTTGCACCAGGCCGTTGCTCTGTGCATCGACCATTGCCATTCTGCAGAATTAACCGCGGACACGAATTGGTTCAAGACCGTAGTCTTATGTGGGGGCAGTGCATGTTTACCAGGTTTGGCAGAGAGATTAGAGAAAGAACTTCATGCCTTGGTTGATCCCAACCTGTCAGACAGAATCACAGTCATACCTCCTCCATATGGCGCGGATTCGGCATGGTTTGGAGCAAAGATGATTGGCAATTTAAGTACCTTTCCTGGTCCATGGTGTATAACAAAGAAGCAGTTCCGTCAAAAGCATAAAACTAATCGGATATGGTGA 1410 0.4574 MMATLFRKLCVCSETASYNNPRPSSEAAASSGSLLESLPNEIVMQIVRLLGPKQAAQLSVVNRKWRSLISDNELWAHFLEVHHPQPWDSVLFSETFLASAYPLLPLPTSVAEMPSVSFKQVYGQRARLPCSVIIDGGSGYCKYGWSTLPCPSWRSATFLEFGNVETPIYTRLRHFFWTIYSRMKAKPSSQPVVVSIPICHYDDTESAKASRRQLKEAIYTALFDMNVPAVCALNQAVLALFAAKQTSGIVVNIGFQVTSVVPILNGKVMRKVGVEVVGLGALKLTGFLREQMQQNNMSFESMYTVRMLKEKLCYVAIDYEAELSKDTQASFEAAGEGWFILKKERFQTGEILFQPRLAGVRAMGLHQAVALCIDHCHSAELTADTNWFKTVVLCGGSACLPGLAERLEKELHALVDPNLSDRITVIPPPYGADSAWFGAKMIGNLSTFPGPWCITKKQFRQKHKTNRIW 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00053 469 Pfam F-box-like 36 77 IPR001810 GO:0005515
Aip01g00053 469 Pfam Actin 204 460 IPR004000 -
Aip01g00053 469 PANTHER ACTIN 91 465 IPR004000 -
Aip01g00053 469 Gene3D - 236 434 - -
Aip01g00053 469 SUPERFAMILY Actin-like ATPase domain 246 460 IPR043129 -
Aip01g00053 469 CDD NBD_sugar-kinase_HSP70_actin 132 276 - -
Aip01g00053 469 Gene3D Actin; Chain A, domain 4 279 362 - -
Aip01g00053 469 SMART fbox_2 38 78 IPR001810 GO:0005515
Aip01g00053 469 Gene3D - 178 463 - -
Aip01g00053 469 ProSiteProfiles F-box domain profile. 32 78 IPR001810 GO:0005515
Aip01g00053 469 PANTHER ACTIN-RELATED PROTEIN 8 91 465 - -
Aip01g00053 469 SUPERFAMILY F-box domain 23 125 IPR036047 GO:0005515
Aip01g00053 469 Gene3D - 25 101 - -
Aip01g00053 469 SUPERFAMILY Actin-like ATPase domain 132 251 IPR043129 -
Aip01g00053 469 SMART actin_3 129 467 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00053 Aip-Chr1 561281 565741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00053 178 461 Cytoskeleton Gene Families AT3G12110 30.717 3.96e-38 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00053 K16616 - gmx:100804254 676.396