Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00052 ATGTGGAATTCGACGGATAATGCGTTTGCGAGATCGACGTCATTTCGGAAGGAAGGGGAGGATGAGGAGGCGCTGCGGTGGGCCGCGCTTGAGAGGCTCCCTACCTACAGGCGAGCGCGGAGGGGAATCTTTAAGAATCTTGGCGGCGACAAGAGGGAGGTCGACGTCGCAGACCTTGGTATGCAGGAGCATCGGATCCTTCTCGAGAGGCTCGCCGATGCACTCGATGATGATCCCGAGACGTTCTTTCAGCTCATGAGAAGTCGATTCGACGCAGTAGATTTGGAGTTTCCGAAGATTGAAGTTCGGTTTCAAAACTTGACAATAGAGACTTTTGTCCATGTAGGAAGCAGAGCATTGCCTACAATTTCCAATTTCATTTGCAATATGAGTGAGGCTCTTCTACGACAAATGAGAATATTAAGAAGGAAGAGAAGCAAATTGACAATTATTGCTGACATTAGTGGGATTATAAGACCTTCAAGACTAACGCTACTGTTGGGTCCACCAAGCTCTGGAAAAACGACACTTCTATTAGCTCTTGCTGGTAGGCTGGGACCTGGTTTACAGATGTCAGGGAACATTACTTACAATGGACATGGTTTGAATGAGTTTGTTCCTCAGAGAACGTCTGCATATGTCAGTCAACAAGATTGGCACGTGGCAGAGATGACCGTGAGGGAAACTCTCCAGTTTGCAGGCCGCTGTCAAGGCGTCGGATTTAAATTTGATATGCTGCTAGAGCTTGCTAGGAGAGAAAAGAGTGCTGGAATAAAACCAGATGTTGATCTTGATCTCTTCATGAAGTCAATTGCTCTTGGAGGACAGGAAACAGATCTTTTGGTAGAGTACATCATAAAGATATTAGGTTTGGACATATGTGGAGACACATTGGTGGGAGATGAAATGCTCAAGGGAATCTCAGGAGGACAAAAGAAGCGACTTACAACAGGCGAGTTACTAATTGGTCCAGCAAGAGTTCTGTACATGGACGAGATATCAACCGGCCTCGATAGTGCAACCACTTACCAAATCATTAGATATCTTAAACATTCTACCCGTGCACTTGATACAACCACTATCATATCTCTTCTCCAACCAGCTCCTGAGACCTATGAATTGTTTGATGATGTCATTCTATTGTGCGAGGGTCAGATTGTTTATCAAGGGCCCCGTGAATCTGCTCTTGAGTTTTTCAAAATGATGGGGTTCACTTGTCCTGAGCGAAAGAATGTAGCAGATTTCTTACAAGAAGTTACGTCAAAGAAGGACCAGGAGCAGTACTGGTCTGCTCTGGACCAGCCTTATCAGTACATAGCTGTTGGGAAGTTTGCCCAAGCGTTTTCATTGTATCGCGAGGGAAAGAACTTATCAGAGGAGCTAAGAGTTCCTTTCGATAAACGCTACAATCATCCCGCAGCCTTGGCTACTTGTACCTATGGCGCCACCAGGCTTGACCTTCTCAGGACAAATTACCAGTGGCAGAAGCTTCTTATGAAACGGAATTCATTCATCTATGTTTTCAAATTTGTTCAGCTGTTTTTGGTAGCTTTAATTACAATGAGTGTATTTTTCCGGACAACGATGCACCATAATACAATTGATGACGGTGGATTATATCTTGGTTCACTGTACTTTTCAATGGTTATTATTCTCTTCAATGGTTTTACCGAGGTGTCAATGTTGGTTGCAAAGCTTCCAGTTTTGTACAAGCATAGAGATTTGCACTTCTATCCTAGCTGGGCATATACAATCCCTTCTTGGTTCCTTAGCATCCCAACTTCTCTCATGGAAGCTGGTTGCTGGGTTGCTGTCTCTTACTATACAATTGGATATGATCCTTCAATTATCAGATTTTTTCGGCAATTCTTGCTTTATTTCTTTCTGCACCAGATGTCTCTAGGCCTATTTCGTCTGATAGGATCCTTGGGGCGGAATATGATAGTGGCCAATACTTTTGGATCCTTTGCCATGTTGATTGTGATGGCTCTTGGCGGATACATCATTTCAAGAGTATGCATTCAATCCAACAATTTCCTTACTCCCTTGAAATTCTTCTCTTTATTACAGACAGTACAAAATCAGGTCACCAACTATCCCTTGGGTAAGCTAGTGTTGAAACAGCGAAGTTTGTATCAAGAGAGCTATTGGTATTGGATTGGTCTTGGAGCAATGGTTGGATATACAATTTTGTTCAACACATTATTTACTATCTTCTTAGCTTACCTTAATCCTTTGGGAAAACAACAAGCTGTAGTTTCAAAGAGTGAGCTAGAAGAAAGAGAAAAGAGAAGGAAAGGTGAAAGTGTTATTGTTGAGTTGAGAGAGTACTTGCAGCATTCAGCATCTAGTGGAAAGCATTTCAAACAAAGAGGAATGGTTCTCCCATTTCAACCTCTTTCCATGGCTTTCAGCAATATCAATTACTATGTGGATGTCCCTTTGGAATTGAAACAAGAAGGGATACAAGAAGAAAGGCTGCAGCTGCTTGTTAATGTTACTGGAGCTTTTAGGCCTGGAGTGTTGACAGCATTGGTTGGAGTAAGCGGAGCTGGAAAAACCACGCTAATGGATGTCTTGGCTGGAAGAAAAACTGGAGGTGTTATAGAAGGGAACATATACATATCTGGTTATCCCAAAAGGCAAGACAGTTTTGCAAGAATTTCTGGTTATTGTGAGCAGACAGATGTTCATTCCCCTTGCTTGACTGTCTGGGAGTCCTTATTGTTCTCTGCTTGGCTCCGGTTATCTTCAGATGTTGACTTTGAAACGCAAAAGGCCTTTGTTGAGGAGGTAATGGAACTGGTGGAACTCACTCCATTGAAAGGGGCACTAGTTGGTCTACCTGGAATTGATGGCTTGTCAACAGAACAACGAAAAAGATTAACAATAGCAGTTGAACTGGTTGCAAACCCATCTATAGTTTTCATGGATGAGCCCACTTCTGGATTGGATGCCAGGGCTGCAGCCATTGTAATGAGAACTGTTAGGAATATAGTGAATACTGGCCGAACCATTGTGTGCACAATCCATCAGCCTAGCATAGACATATTCGAATCGTTTGATGAGCTTCTGTTTATGAAGCGTGGAGGAGAGCTCATATATGCTGGTCCACTTGGCCCTAAATCTAGTGAACTTATCAATTATTTCGAGGCAGTGGAAGGGGTTCCGAAGATCAGGTCTGGATATAACCCTGCAACATGGATGTTGGAGGTTACTTCTTCAACAGAAGAAAACCGTTTAGGAGTGGACTTTGCAGAAATATACAGAAGATCAAGTTTATACCAGTATAATGAAGAATTGGTTGAAAGCTTGAGCAAGCCGAGCAATAATTCAAAAGAGTTGCATTTTCCAACCAAGTATTGTCGGTCATATTTTGATCAGTTCCTAACTTGTCTTTGGAAGCAAAATCTATCTTACTGGCGTAACCCACACTACACTGCTGTTCGCTTCTTTTACACTGTCATCATCTCCTTGATGCTTGGCACAATATGCTGGAGATTTGGTGCTAAAAGAGACATGCAGCAAGATCTATTCAATGCCATGGGATCCATGTATTCTGCAATCCTCTTCATTGGCATAACAAATGGCACAGCCGTTCAACCTGTTGTTTCGGTTGAAAGATTTGTTTCATATAGAGAAAGAGCTGCTGGGATGTACTCGGCCTTACCATTTGCTTTTGCTCAGGTTATTATTGAGTTTCCTTATGTGTTGGCACAGGCTATGATATACTCCACAATTTTCTATTCCATGGCTTCCTTTGCCTGGAGTGTTGATAGGTTCCTATGGTACCTGTTCTTCATGTATGTTACTATGCTGTATTTTACCTTCTATGGAATGATGACAACGGCTGTCACACCAAATCATAATGTTGCTGCCATTATCGCTGCTCCATTTTATATGTTATGGAACCTTTTCAGTGGTTTTATGATTCCTCATAAGAGAATCCCTGTTTGGTGGAGATGGTATTACTGGGCAAACCCTGTAGCCTGGAGTCTTTATGGTCTCCTGACTTCACAGTATGGTGGTGATGAAAAATCTGTGAAGCTATCTAATGGGAATTCCATGGCTATTTCGCAACACATTCATTTGAAAGTTGAAACACAAACAAATCGTTTCCCCTTCTCCAACAACACAAAATACCTCTCTCTGAGTTCCAATTTGGCGCTATCTCCCTGCCAACTGAAAACCCTAGATCTTCATTTTGGGCACCTGAATCGCGGTATCCGACTTAATCTTACCAAACCTGTCCTATCATCGGCTCTTGAGGGTTATGGTGCGGTCCATGAGCCAAATTATCGGGTTGGGGGTGCTTATGAGGATAGACGCTTTGTAGATGAAAGATATCCAAGGGATGCCATATACCAGAGAAATGCTTTCCATCGTGACATTTTGGATAGGGAGGGCTATATGCCACCAGGACCTCCTGTTGGCCACTGGAATCAATCCAAAAGGAGAGGTTATGAGGAAGATTATCCAATTGACAGAGAATCTAGACGTTTTCAGAGGCCTTATCATGAGCCATATAATCAGATTGATGCCTACAGGGAAGCCGATATTGACACGTTCCCAGAATATGATAAGTTTCGAGATGGTTATGGCAGCATTGAAAACTATGGTGATCGAGGATATGATAAACCTGCCAGGTTTGGAGGACATGACCGTGATGATTATGCATATGATGACTATGGCTACAAGTCCCGTGCTTCTCATCATCGTAGGGAGGATAGCCATGAGAGGGATTATGATCATGGCCGCCATAGTTATGATTCTGATTATGAAAGAGGCAGTAGAAGAGATAGTAACTGGAGGCGACGTGGATCACGTGATCGAGAACATGATAGAAGAGGTCTTAGTCGGGAAAGAGATGTAAGCCCGCGTAAGAGGCGTGAGCATTCTCATTCTAGGTCCCGGTCCCGTTCCCGGTCCCGGTCCAAATCTCAGTCCCATTCCCGATCCCGCTCCCAGTCTCGTGGATACGACGATCATCCAAGATCAAGGTCCCCTCGAGGTCGAAGCCATAGTCGGAGTTATAGAGAAGATAGCTATAGTGACAGTCGATACGATAGAAGTGAAAGACGCAGGGATCGTGAGGATAAACGTCAGCGTGAACATTATTCAGTGGCCCCATCTGCAACTATTGTTGTGAAAGGTCTCTCACAGAAAACTACTGAGGAGGATCTGTACCAAATACTTGCGGAGTGGGGACCCCTTCGTCATGTTCGTGTTATAAAGGAAAGAAATTCTGGCATTTCTCGGGGATTTGCGTTTATCGATTTTCCTTCTGTGGGAGCCGCACAAGCAATGATGGACAAGCTAGGAGATGATGGTCTTGTTGTGGATGGCAGAAAGCTTTTCTTCGAATATAGTAGTAAACCTACTGGTGGTCCAGGTCCTGATGGAGCTATGAAATCAGGCCATAATCATAAGAGCATTACAATACCATCTGATTGGATGTGCACTATATGTGGCTACATCAATTTTGCACGTCGTACCTCTTGTTATCAGTGTAATGAGCCACGAACTGAGGATGCTCCTGCAGCAGATATTTCATTAACAAATTCATCAGCCATAGGGAAGAAGGGTCTGGAGGCAGGTCCAACTCATGTTTTGGTTGTTCGCGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCTAAACATGCTCCAATTAAGGATCTGCGTCTTGTGAGAGACAAGTTTACACATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCGGTGGAGGATGCTACCAAAGCTCTTGAGGCAACAAATGGGACTACTCTTGAGAAGAATGGACAAATTCTAAGAGTGGCATATGCTAAAAGTATCTTGGGCCCTGGATCAGGAGCACCAGGAACTTCCCAATCAAGCAGCCTTGCAGCAGCTGCTATTGAGGCTGCGACCTTTGCTCAACAGTATGATTCTGTGGGGTGGGCTCCAAAAGAATACAATCCCGATGATAAGCAAGCTACTGCTCCTGAGCAAAGCACCGCAGGTGGTGCTCCACAATCAGGCTTTGTTTGGGATGAAGCATCCGGTTATTACTATGATGCCGCATCTGGGTTTTACTACGATGGAAATACTGGTCTTTACTACGATGGTAATAATGGGATATGGTATACGTATGA 6149 0.4355 MWNSTDNAFARSTSFRKEGEDEEALRWAALERLPTYRRARRGIFKNLGGDKREVDVADLGMQEHRILLERLADALDDDPETFFQLMRSRFDAVDLEFPKIEVRFQNLTIETFVHVGSRALPTISNFICNMSEALLRQMRILRRKRSKLTIIADISGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGPGLQMSGNITYNGHGLNEFVPQRTSAYVSQQDWHVAEMTVRETLQFAGRCQGVGFKFDMLLELARREKSAGIKPDVDLDLFMKSIALGGQETDLLVEYIIKILGLDICGDTLVGDEMLKGISGGQKKRLTTGELLIGPARVLYMDEISTGLDSATTYQIIRYLKHSTRALDTTTIISLLQPAPETYELFDDVILLCEGQIVYQGPRESALEFFKMMGFTCPERKNVADFLQEVTSKKDQEQYWSALDQPYQYIAVGKFAQAFSLYREGKNLSEELRVPFDKRYNHPAALATCTYGATRLDLLRTNYQWQKLLMKRNSFIYVFKFVQLFLVALITMSVFFRTTMHHNTIDDGGLYLGSLYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTIPSWFLSIPTSLMEAGCWVAVSYYTIGYDPSIIRFFRQFLLYFFLHQMSLGLFRLIGSLGRNMIVANTFGSFAMLIVMALGGYIISRVCIQSNNFLTPLKFFSLLQTVQNQVTNYPLGKLVLKQRSLYQESYWYWIGLGAMVGYTILFNTLFTIFLAYLNPLGKQQAVVSKSELEEREKRRKGESVIVELREYLQHSASSGKHFKQRGMVLPFQPLSMAFSNINYYVDVPLELKQEGIQEERLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGNIYISGYPKRQDSFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDFETQKAFVEEVMELVELTPLKGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSSELINYFEAVEGVPKIRSGYNPATWMLEVTSSTEENRLGVDFAEIYRRSSLYQYNEELVESLSKPSNNSKELHFPTKYCRSYFDQFLTCLWKQNLSYWRNPHYTAVRFFYTVIISLMLGTICWRFGAKRDMQQDLFNAMGSMYSAILFIGITNGTAVQPVVSVERFVSYRERAAGMYSALPFAFAQVIIEFPYVLAQAMIYSTIFYSMASFAWSVDRFLWYLFFMYVTMLYFTFYGMMTTAVTPNHNVAAIIAAPFYMLWNLFSGFMIPHKRIPVWWRWYYWANPVAWSLYGLLTSQYGGDEKSVKLSNGNSMAISQHIHLKVETQTNRFPFSNNTKYLSLSSNLALSPCQLKTLDLHFGHLNRGIRLNLTKPVLSSALEGYGAVHEPNYRVGGAYEDRRFVDERYPRDAIYQRNAFHRDILDREGYMPPGPPVGHWNQSKRRGYEEDYPIDRESRRFQRPYHEPYNQIDAYREADIDTFPEYDKFRDGYGSIENYGDRGYDKPARFGGHDRDDYAYDDYGYKSRASHHRREDSHERDYDHGRHSYDSDYERGSRRDSNWRRRGSRDREHDRRGLSRERDVSPRKRREHSHSRSRSRSRSRSKSQSHSRSRSQSRGYDDHPRSRSPRGRSHSRSYREDSYSDSRYDRSERRRDREDKRQREHYSVAPSATIVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQAMMDKLGDDGLVVDGRKLFFEYSSKPTGGPGPDGAMKSGHNHKSITIPSDWMCTICGYINFARRTSCYQCNEPRTEDAPAADISLTNSSAIGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGAPGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNPDDKQATAPEQSTAGGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYTY 2049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00052 2049 MobiDBLite consensus disorder prediction 1631 1651 - -
Aip01g00052 2049 Gene3D - 1812 1844 - -
Aip01g00052 2049 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1712 1792 IPR000504 GO:0003723
Aip01g00052 2049 SUPERFAMILY RNA-binding domain, RBD 1708 1806 IPR035979 GO:0003676
Aip01g00052 2049 CDD RRM1_RRM2_RBM5_like 1710 1790 - -
Aip01g00052 2049 CDD RRM1_RRM2_RBM5_like 1867 1947 - -
Aip01g00052 2049 SMART zf_4 1816 1840 IPR001876 -
Aip01g00052 2049 ProSitePatterns Zinc finger RanBP2-type signature. 1818 1837 IPR001876 -
Aip01g00052 2049 Pfam ABC transporter 153 333 IPR003439 GO:0005524
Aip01g00052 2049 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 802 1055 IPR003439 GO:0005524
Aip01g00052 2049 SUPERFAMILY Ran binding protein zinc finger-like 1809 1844 IPR036443 -
Aip01g00052 2049 SMART rrm1_1 1870 1945 IPR000504 GO:0003723
Aip01g00052 2049 SMART rrm1_1 1713 1788 IPR000504 GO:0003723
Aip01g00052 2049 MobiDBLite consensus disorder prediction 1534 1555 - -
Aip01g00052 2049 CDD OCRE_SUA_like 2006 2049 IPR035623 -
Aip01g00052 2049 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 135 408 IPR003439 GO:0005524
Aip01g00052 2049 PANTHER ATP-BINDING CASSETTE TRANSPORTER 9 1363 - -
Aip01g00052 2049 SMART AAA_5 160 385 IPR003593 -
Aip01g00052 2049 SMART AAA_5 839 1031 IPR003593 -
Aip01g00052 2049 MobiDBLite consensus disorder prediction 1987 2010 - -
Aip01g00052 2049 Pfam ABC-transporter N-terminal 76 126 IPR029481 -
Aip01g00052 2049 Pfam ABC transporter 831 982 IPR003439 GO:0005524
Aip01g00052 2049 MobiDBLite consensus disorder prediction 1568 1630 - -
Aip01g00052 2049 PANTHER ABC TRANSPORTER G FAMILY MEMBER 32 9 1363 - -
Aip01g00052 2049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 409 IPR027417 -
Aip01g00052 2049 Pfam ABC-2 type transporter 366 419 IPR043926 GO:0140359
Aip01g00052 2049 Pfam ABC-2 type transporter 490 671 IPR013525 GO:0016020|GO:0140359
Aip01g00052 2049 Pfam ABC-2 type transporter 1128 1340 IPR013525 GO:0016020|GO:0140359
Aip01g00052 2049 Gene3D - 1855 1983 IPR012677 -
Aip01g00052 2049 Gene3D - 1676 1811 IPR012677 -
Aip01g00052 2049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 825 1038 IPR027417 -
Aip01g00052 2049 CDD ABCG_PDR_domain2 799 1037 IPR034003 -
Aip01g00052 2049 Gene3D - 815 1046 IPR027417 -
Aip01g00052 2049 MobiDBLite consensus disorder prediction 1655 1706 - -
Aip01g00052 2049 Pfam OCRE domain 2010 2049 IPR041591 -
Aip01g00052 2049 Pfam Plant PDR ABC transporter associated 695 753 IPR013581 -
Aip01g00052 2049 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1871 1937 IPR000504 GO:0003723
Aip01g00052 2049 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1714 1774 IPR000504 GO:0003723
Aip01g00052 2049 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1869 1949 IPR000504 GO:0003723
Aip01g00052 2049 MobiDBLite consensus disorder prediction 1568 1706 - -
Aip01g00052 2049 SUPERFAMILY RNA-binding domain, RBD 1867 1953 IPR035979 GO:0003676
Aip01g00052 2049 ProSiteProfiles Zinc finger RanBP2 type profile. 1814 1843 IPR001876 -
Aip01g00052 2049 Gene3D - 137 437 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00052 Aip-Chr1 538253 555805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00052 1711 1933 Eukaryotic Initiation Factors Gene Family AT2G36660 25.600 2.22e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00052 K08711 - gmx:100815410 2399.39