Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00033 ATGGCTACTACCAAGTTCAGACATGTCTTTGGTAGATTATGGGGTTTTGCTACTTCTTGTAAGAAAAATAGTAGCACCCCAATTGGCTCAAGAATTCTCCAAAGGGATGTGGAAAAGGAAGAATTTCAGTATGCTAGTACTCTGTGCCTATCAAAATACTATAGTGTCTTTGTGGTTCGTCTTGCAATCATGGTTATGCTAGCTATCTTGATTGGTCTTCTTACTATACTAACATGGCATTTCACAAAGATTTATACAACAAAATCTCTTAATAGCTTAGCCTATGACTTGCGTTATGAGCTTCTACAACGCCCAATCTTGAGGATGTGGAACATTTTGAATTCTACTTCTGAAATTACAATGGCTCAGGTCAAGCTTTCTCAGTATGTGATTAGAAGCCATGGCAATCTTACCACTCAAGAAAACCAAGTTGAGATGTATGAAGCAATGAGAGCAGTAACATGGGCACTTTTTGCTAGTAGAAAAGCTCTTAACTCAATCACTGTCAAATACAATAATGGTTTTGTTCAAGCATTCCATAGAGACCTTAAAGATAACAACACATTCTATATTTACTCTGATCTTGCAAATTATTCCATTGGTGCAAGTGCAAGTAGCTCTAACAGTGACATTAATTATTCATCACTTTCTTCTCAAGAATCTTGGAATGATCATGATAACAAGTCTGCTGTATGGTATCGCCAGCCATTGGATCCTGTCACCGGCGAAAAGATTGGAAAAGCAATGCAGATTGCCCCAGAAGACTCAATCCACATAGCAGGCCTATCCCAAGTCCCTGATGGGGTGGCTTCATGGCGTGTCGTCGTGAGCAAGTTCACAGATTCGCCTTTGCTTTCGGCTGCATTGCCTGTTTGGGATCCTTCTAACAAGAGTATTGTGGCTGTGGTGGGAGTAACAACTGCACTTTATAGTGTAGGACAGTTAATGAAGGAGCTTGTTGAGTTGCATAGTGGACATATGTATTTAACTTCTCTAGAAGGTTACTTGCTTGCAACTTCCACTGATGCACCTCTTCTTACAAATTCAACAAAGCCTCCTAAGCTTAAGATGGCTGTAGATTGTGAAGATGAAGTGATAAGGCTTGGAGCTGAGTATTTGAAGAAAAGTTCTGGTAACAAATTCCCTCCTAGCCATGAGGTTCATGTCGCGAATGTCAGGCTAGGCCACGACAGATATTACATCGATTCGTTCTTCCTAAACTTGAAGAGACTTCCTATGGTTGGTGTAATAATCATTCCAAGAAAGCATATATTAGGCCAGGAAGATAAAAGAGCCTTCAAGACTTTGGTTATTCTGATATCTGCATCAATGTGTATTATAGTCATTGGATGGGTTTGCATTTTGATTTTGACAAATGGAGTCTCAAAAGAAATGAAACTAAGAGCAGAACTTATTAGTCAGCTTGAAGCTAGAAGAAAGGCAGAGGCATCAAGCAACTATAAGAGCCAATTTCTTGCAAACATGAGCCATGAATTGAGGACACCTATGGCTGCAATAATTGGCCTACTCGACATTCTTATGTCCGACGACTGTCTAACCAACGAGCAGTGTGCAACGGTTACTCAGATAAGAAAATGCTCGACTGCGCTGCTCCGGCTTCTTAATAACATCTTGGATCTCAGCAAGGTGGAATCAGGAAAGCTAGTTCTAGAAGATGCTGAATTCGACTTGGGAAGGGAACTTGAAGGACTAGTGGATATGTTTTCAGTGCAATGCATGAATCACAGTGTAGAGACTGTCTTAGACCTATCTGATGATATGCCGAAGCTAGTTCGCGGCGACTCTGCTAGAGTAGTCCAAATTTTTGCAAATTTGATCAACAACTCAATTAAATTTACTCCTTCTGGTCACATTATTCTGAGAGGATGGTTTGAGAATCCAAATCCATGTAGTGATAATGCAAATTATCTTATGGAAGAGAAGAATTTACAATGTGCACAAAAGACTAGAGCAAGGCAACATGAGAACCATGCAAAGAGGACTTCTAAGAGGGATAACAAAGCAATCCTATGGTTTGAAGTTGATGACACCGGCTGTGGTATTGATCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCAGATCCCTCAACTACTAGACTGCATGGAGGTACTGGCCTTGGTCTTTGCATTGTCAGAAGCTTGGTTAATAAGATGGGTGGAGAAATCAAAGTTGTCAAAAAGGAAGGTCCCGGAACACTGATGAGATTATACCTGCGCCTCGATACGGCCGGGGATGACACAGAACAACATTGTTTGGTAGATATTGCAAACAATGGCTTAGTGGTATTGCTTGCACTGCACGGCAACATGGGAAGATCAATCACATCTAAGTGGCTGCAGAAAAATGGGGTTTTGAAGTCCAAGTTACTTAGCATACAAGAAATCAAGAATCCAGTTTTTGTCATCGCAGTCGACATAGGACTACTCGATTTGAGCACAGATATATGGAAGGAGCAGCTTAACTTTCTTCACAGATATGTGGGGAGGGCGAAATTTATATGGGTTCTAAACCATGACACCTCTAACACCATTAAAATGGAGCTTAGAAGAAAAGGATATATGATGACAGTTAACAAACCACTTTACAAAGCAAAAATTGTTCACATTTTGGAGGAAGTTGTAAAAGAGAGAAATCATGAGATGCAAAAGAAGAACATGGATGAGCTTCATGAGAGTGATTATACTCATTGTGATGCTGCTAGCTCGGACGATTCGGACATATCCGAATCAGGTCCTTGTAATCCTGTTAGTAGTACTAATCATGAAAAAAAAAGTGAGAAGGTTGAGCAGTTTCATAGATTATCACTGTATAGGATTAACAACTGCTTAATAGGATTAACAGATGAACATTCAGAAGCTAATAATACTCCAAAGAAGGAAGAGTTATGTCAAAATAACCAAAACTCTCCAAAATCATTGTCTCCAGAACAAGACTATTTTCCAAGAGAAGCTCATCAAGGTGAAGATTCTGAGAGCAGAGGCAAAGAAGAGCATAGGATCATCGGCGGCTCGGCTAGGCCGGTAAATGGAAAGAAATCTCTTGAAGGGTTAAGGATATTGCTTGCAGAAGACACACCTGTGATTCAAAGAGTTGCAACCATAATGCTTGAGAAGATGGGAGCAAGTGTTGTAGCAGTTGGTGATGGACAAGCAGCAGTGGATGCTTTGAATGGCTTGCTTGGTGTTGAAGATTTTAGAAGAGACTCAAACTTGAATGAAAGGAACACAAGATCATCATCTTCTCAAACTGAAATTCTCAGTTTCCCTTCATATGACTTGGTCCTAATGGATTGTCAGATGCCAAAGATGGATGGATATGAAGCAACAAAAGCAATAAGAAAATCAGAAGTGGGAAGTGGAGTTCACATTCCAATAGTTGCTCTCACTGCTCATGCAATGTCATGTGATGAAGCCAAATGCTTAGAAGTTGGAATGGATGCTTATTTAACCAAACCAATTGACTTCAAATTGATGGAATCCACTATTCTTTCTCTCACAAGAAGAACAATATCCTAA 3546 0.4007 MATTKFRHVFGRLWGFATSCKKNSSTPIGSRILQRDVEKEEFQYASTLCLSKYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTSEITMAQVKLSQYVIRSHGNLTTQENQVEMYEAMRAVTWALFASRKALNSITVKYNNGFVQAFHRDLKDNNTFYIYSDLANYSIGASASSSNSDINYSSLSSQESWNDHDNKSAVWYRQPLDPVTGEKIGKAMQIAPEDSIHIAGLSQVPDGVASWRVVVSKFTDSPLLSAALPVWDPSNKSIVAVVGVTTALYSVGQLMKELVELHSGHMYLTSLEGYLLATSTDAPLLTNSTKPPKLKMAVDCEDEVIRLGAEYLKKSSGNKFPPSHEVHVANVRLGHDRYYIDSFFLNLKRLPMVGVIIIPRKHILGQEDKRAFKTLVILISASMCIIVIGWVCILILTNGVSKEMKLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAIIGLLDILMSDDCLTNEQCATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCMNHSVETVLDLSDDMPKLVRGDSARVVQIFANLINNSIKFTPSGHIILRGWFENPNPCSDNANYLMEEKNLQCAQKTRARQHENHAKRTSKRDNKAILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRSLVNKMGGEIKVVKKEGPGTLMRLYLRLDTAGDDTEQHCLVDIANNGLVVLLALHGNMGRSITSKWLQKNGVLKSKLLSIQEIKNPVFVIAVDIGLLDLSTDIWKEQLNFLHRYVGRAKFIWVLNHDTSNTIKMELRRKGYMMTVNKPLYKAKIVHILEEVVKERNHEMQKKNMDELHESDYTHCDAASSDDSDISESGPCNPVSSTNHEKKSEKVEQFHRLSLYRINNCLIGLTDEHSEANNTPKKEELCQNNQNSPKSLSPEQDYFPREAHQGEDSESRGKEEHRIIGGSARPVNGKKSLEGLRILLAEDTPVIQRVATIMLEKMGASVVAVGDGQAAVDALNGLLGVEDFRRDSNLNERNTRSSSSQTEILSFPSYDLVLMDCQMPKMDGYEATKAIRKSEVGSGVHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTRRTIS 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00033 1181 Gene3D - 1012 1175 - -
Aip01g00033 1181 PRINTS Bacterial sensor protein C-terminal signature 736 749 IPR004358 GO:0016310|GO:0016772
Aip01g00033 1181 PRINTS Bacterial sensor protein C-terminal signature 695 705 IPR004358 GO:0016310|GO:0016772
Aip01g00033 1181 PRINTS Bacterial sensor protein C-terminal signature 712 730 IPR004358 GO:0016310|GO:0016772
Aip01g00033 1181 PRINTS Bacterial sensor protein C-terminal signature 677 691 IPR004358 GO:0016310|GO:0016772
Aip01g00033 1181 Pfam His Kinase A (phospho-acceptor) domain 488 553 IPR003661 GO:0000155|GO:0007165
Aip01g00033 1181 SMART HisKA_10 487 553 IPR003661 GO:0000155|GO:0007165
Aip01g00033 1181 MobiDBLite consensus disorder prediction 906 937 - -
Aip01g00033 1181 ProSiteProfiles Histidine kinase domain profile. 494 752 IPR005467 -
Aip01g00033 1181 ProSiteProfiles Response regulatory domain profile. 1028 1176 IPR001789 GO:0000160
Aip01g00033 1181 SMART REC_2 1027 1172 IPR001789 GO:0000160
Aip01g00033 1181 SMART HKATPase_4 600 752 IPR003594 -
Aip01g00033 1181 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 542 749 IPR036890 -
Aip01g00033 1181 Gene3D - 475 554 - -
Aip01g00033 1181 PANTHER OSMOSENSOR HISTIDINE KINASE 3 796 - -
Aip01g00033 1181 PANTHER OSMOSENSOR HISTIDINE KINASE 804 1177 - -
Aip01g00033 1181 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 475 554 IPR036097 GO:0000155|GO:0007165
Aip01g00033 1181 CDD HisKA 488 549 IPR003661 GO:0000155|GO:0007165
Aip01g00033 1181 CDD REC_hyHK_CKI1_RcsC-like 1029 1172 - -
Aip01g00033 1181 MobiDBLite consensus disorder prediction 914 929 - -
Aip01g00033 1181 MobiDBLite consensus disorder prediction 968 985 - -
Aip01g00033 1181 MobiDBLite consensus disorder prediction 991 1012 - -
Aip01g00033 1181 MobiDBLite consensus disorder prediction 962 1017 - -
Aip01g00033 1181 Gene3D - 555 755 IPR036890 -
Aip01g00033 1181 PANTHER TWO-COMPONENT HISTIDINE KINASE 3 796 - -
Aip01g00033 1181 PANTHER TWO-COMPONENT HISTIDINE KINASE 804 1177 - -
Aip01g00033 1181 Pfam Response regulator receiver domain 1029 1169 IPR001789 GO:0000160
Aip01g00033 1181 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 600 751 IPR003594 -
Aip01g00033 1181 SUPERFAMILY CheY-like 1025 1177 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00033 Aip-Chr1 324795 331570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00033 5 1177 Histidine Kinase Gene Family AT2G17820 61.777 0.0 1457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip01g00033 HATPase_c 1.5e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00033 - - gmx:100801970 1783.07