Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip01g00020 ATGGCACCATTTTTACTGCATGGAGATATCAATGCAACCATTTATGAGACTCAAAAGTTCGACACCTTTTCATCGGTGCCCCTTTATGCAAGCATTTATCTGGATGAAGTAAAGATTGAAAGCAGGCGTTTAAAAGAGCCTATTAACCCTAAATTGGAAGAGTGTTTTTACATTCGTTGTGCCCATATGGCATCAAATATCGTAGTCAAATTGGAACGTGACAAATGGCTTTCTTCTCTTCGTGGACGAGGTGTTATTGGAGAAGCATATGTGGAAGTTGATGAGAAAATGTTAAATGGTGTTGAAGTTGACAAATGGGTTGAAATTGTTGATGCCAGTAAAAAGCCCATATCTGGGGGTCCAAAAATCCATGTGAAGCTACAACTTTTTGATGCTAAACGACACCAAAACTGGTCTCAAGGCATCAAATCTCCTGACTTCCCTGGAGTTCCTCGCACTTTCTTCTCCCAGCATAAGGGATGCAAGGTTACTCTTTACCAAGATGCTCATGTCCTAGATGATTTTTCTCCAAGAGTAGTGCTTGATGGAAGTAAGACTTACGAGCCTCAAAGATGCTGGGAGGATATCTTTGATGCAATCAACGAAGCAAAACACTTTATATACATCACTGGTTGGTCTCTTTACACTCAGATTTCTCTGATAAGAGATCCTAAGAGGCCAAAGCATGGTGGAGACATAACACTCGGTGAGTTGCTCAAGAAAAAGGCAAAGGAAGATGGAGTCAGGGTTGTTCTGCTTCTATGGCAGGATGGAATAATTCGAGTTCCAGGAATTGGAAGCTACGCCAGAACCATGGGTACTCATGATAAAGAAACCCAAAGCTATTTCAAGGACACAAATGTCCACTGCATTTTGTGCCCACGTGACAGTGTTTTTTACACTCATCACCAAAAGATTGTGGTGGTGGATGCTAAGTTGCCAAATGGAAAGGACTCAGATCATCAAAGAAGAATTGTGAGTTTCATTGGAGGTATTGATCTCTGTAATGGAAGATATGATACTCAATTTCATTCTCTTTTTCAAACTTTAGCTGCTGAACACAGTAAAGATTTTTATCAACCAAGTATTTCTGGATCTGCAATTGAAAAGGGTGGTCCTAGGGAGCCATGGCATGATATACACTGTAAGCTTGAAGGGCCTATTGCATGGAATGTTTACTCCACCTTTGTGCAGAGATTTCGAAAACAGGGCACAGATCAGGGGATGCTTCTTTCAGAAGAAAAGCTTAAGGATTTCATCATTGCACCATCTCAAGCAACGAACCCTGATGATGATAATGAGACGTGGAATGTTCAGTTGTTCAGATCCATTGATGATACAGCTACTCTTGGTTTTCCAGAAACTGCTAAAGAAGCTTTTGAACATGGGCTTGTTAGTGGGGAGAACAAGATGATAGATCGAAGCATTCAAGATGCATACATTAATGCTATTCGGCGAGCAAAGAATTTCATATATATTGAGAACCAATATTTCATAGGAAGTGCTTTTGGGTGGAGTGTGGATAGCACAGAATTTGATGCTGTTCATCTTATCCCAAAGGAGCTTTCACTCAAAATTGTTAGCAAGATTAAAGCTAAGGAGAAGTTCATGGTGTATGTAGTGATTCCAATGTGGCCGGAGGGTGTTCCAATAAATAAGACTACTGGAACTGTTCAGAAAATACTATATTTGCAGAGGAGGACTATAGAGATGATGTACAAGGACATTGTTGAAGCACTCAAGGAAGAGAAAATTGAACAAGATCCTCGGAAATATTTGTCATTCTTCTGTCTTGGCAATCGAGAGGTAAAGAAGGACGGAGAGTATGTGCCTCCACAGAGACCAGAACAAGGTTCtgattaccagaaagctcaagaagccagacgcttcatgaTTTATGTGCATTCCAAGATGATGATAGTTGATGATGAGTACATAATCATTGGATCTGCCAACATCAACCAGAGATCCATGGATGGTGGAAGAGACACCGAAATTGCCATGGGAGCTTATCAACCGCACCATTTGGCTACCAGCCAGGGTGGTGCAAGAGGCCAAATCCATGGCTTTCGCATGTCCCTATGGTACGAGCACCTTGGCATGCATGAAGACACCTTCCTCAACCCAGAAAGTGAAGAATGTATTAACAAAGTGAAGCAACTTGGAGACAAGTATTGGGAGTTGTATTCTAACAAGGATTTACTTGGATCTAATAACCTTCCTGGTCACTTGCTTCGATATCCTGTTGACATTTCTGCTGATGATGGAACACTCACAAATCTCTCAGGAGTTGAATTCTTCCCTGACACTAATGCTCCTATTCTAGGTGCCAAAAACCCTACTATCATAAATCGAGTTCTTCCTAACAAGATCTTCACCATGTAA 2385 0.4042 MAPFLLHGDINATIYETQKFDTFSSVPLYASIYLDEVKIESRRLKEPINPKLEECFYIRCAHMASNIVVKLERDKWLSSLRGRGVIGEAYVEVDEKMLNGVEVDKWVEIVDASKKPISGGPKIHVKLQLFDAKRHQNWSQGIKSPDFPGVPRTFFSQHKGCKVTLYQDAHVLDDFSPRVVLDGSKTYEPQRCWEDIFDAINEAKHFIYITGWSLYTQISLIRDPKRPKHGGDITLGELLKKKAKEDGVRVVLLLWQDGIIRVPGIGSYARTMGTHDKETQSYFKDTNVHCILCPRDSVFYTHHQKIVVVDAKLPNGKDSDHQRRIVSFIGGIDLCNGRYDTQFHSLFQTLAAEHSKDFYQPSISGSAIEKGGPREPWHDIHCKLEGPIAWNVYSTFVQRFRKQGTDQGMLLSEEKLKDFIIAPSQATNPDDDNETWNVQLFRSIDDTATLGFPETAKEAFEHGLVSGENKMIDRSIQDAYINAIRRAKNFIYIENQYFIGSAFGWSVDSTEFDAVHLIPKELSLKIVSKIKAKEKFMVYVVIPMWPEGVPINKTTGTVQKILYLQRRTIEMMYKDIVEALKEEKIEQDPRKYLSFFCLGNREVKKDGEYVPPQRPEQGSDYQKAQEARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAYQPHHLATSQGGARGQIHGFRMSLWYEHLGMHEDTFLNPESEECINKVKQLGDKYWELYSNKDLLGSNNLPGHLLRYPVDISADDGTLTNLSGVEFFPDTNAPILGAKNPTIINRVLPNKIFTM 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip01g00020 794 PANTHER PHOSPHOLIPASE D 8 781 IPR015679 -
Aip01g00020 794 PANTHER PHOSPHOLIPASE D 8 781 - -
Aip01g00020 794 SUPERFAMILY Phospholipase D/nuclease 133 402 - -
Aip01g00020 794 Pfam Phospholipase D C terminal 703 778 IPR024632 -
Aip01g00020 794 Gene3D Endonuclease Chain A 432 679 - -
Aip01g00020 794 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 19 130 IPR035892 -
Aip01g00020 794 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 630 657 IPR001736 GO:0003824
Aip01g00020 794 PIRSF PLD_plant 5 787 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Aip01g00020 794 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 298 338 IPR001736 GO:0003824
Aip01g00020 794 SMART pld_4 298 338 IPR001736 GO:0003824
Aip01g00020 794 SMART pld_4 630 657 IPR001736 GO:0003824
Aip01g00020 794 Pfam Phospholipase D Active site motif 299 338 IPR001736 GO:0003824
Aip01g00020 794 Pfam Phospholipase D Active site motif 631 657 IPR001736 GO:0003824
Aip01g00020 794 SUPERFAMILY Phospholipase D/nuclease 463 715 - -
Aip01g00020 794 Gene3D Endonuclease Chain A 180 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip01g00020 Aip-Chr1 226848 231949 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip01g00020 1 779 Phospholipase D Gene Family (Wang group) AT3G15730 58.080 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip01g00020 K01115 - sind:105158388 959.903